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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G0057 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 386aa MW: 44544.9 Da PI: 9.7785 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128 | 9.4e-40 | 166 | 307 | 1 | 131 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg.. 88 aa k+drhski T+ g+RdRR+Rls+++a++fF Lqd+LG+dk+s t+eWLl qakp+i +l+++ + s++ +++e++++s+ + ++ Gh_A11G0057 166 AASKTDRHSKINTANGPRDRRMRLSLDVAREFFGLQDMLGYDKASRTVEWLLIQAKPEINKLMNNnnnsfgfaK-SPS--STSETEVVSGIDKAAAid 260 5889*************************************************************666665431.222..122233333332222255 PP TCP 89 ....kaaksaakskksqksaasalnlakesrakarararertrekmr 131 k +s++++k+++++++s++ la++ r kar+ra+ rt+ek++ Gh_A11G0057 261 gnipKGTPSKKEKKERRQRKTSFRPLARDMRVKARERAKARTKEKNM 307 66667777777777777777789********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-40 | 168 | 307 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.701 | 169 | 227 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.009 | 288 | 305 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MKKGQNFKVY ANEIVALAIK LKHLEISSIS LYENYDFVHR DSPHRHREYM HIISFAVLVF 60 PKGNGNNNDP ITYFDNSILP LSFFHFPSSP YYNQCELLQL VDDYDVLWNQ QQQQRFDDDD 120 DDQFLHQTTL LTDNSVSETI VNLPDCRHNN TTTDIHQQPM PRKRPAASKT DRHSKINTAN 180 GPRDRRMRLS LDVAREFFGL QDMLGYDKAS RTVEWLLIQA KPEINKLMNN NNNSFGFAKS 240 PSSTSETEVV SGIDKAAAID GNIPKGTPSK KEKKERRQRK TSFRPLARDM RVKARERAKA 300 RTKEKNMSLR LNNETRDNDP NRFGSSWSST WTKQPGIQHH HNNNNTVLQA NNININGDRM 360 IWSLNCLQNT GLINQEAQSF GKPREA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX622938 | 0.0 | JX622938.1 Gossypium hirsutum clone NBRI_GE69896 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016709019.1 | 0.0 | PREDICTED: transcription factor TCP18-like | ||||
TrEMBL | A0A1U8L791 | 0.0 | A0A1U8L791_GOSHI; transcription factor TCP18-like | ||||
STRING | Gorai.007G007500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 1e-29 | TCP family protein |