PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G2023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 328aa MW: 37378.3 Da PI: 5.459 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.3 | 9.5e-43 | 19 | 148 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppG+rF+P+d+e++++yL++k+ g +l+ + ikev +y+++P++L + ++ +e+yfF++rd+kya+g+r+ r + +gyWkatg dk +++ Gh_A10G2023 19 PPGYRFKPRDDEIINFYLRPKIFGLPLPP-NRIKEVFLYNYDPQTLTAmsnnaLSNGVGNEYYFFTPRDRKYANGSRPARNAGNGYWKATGADKLICR 115 9*************************999.77**************8434443222245699**********************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 kg+++glkk+Lvfy+g+ pkg+kt+W+mhey l Gh_A10G2023 116 -KGKKIGLKKSLVFYQGKPPKGVKTNWLMHEYVL 148 .9999***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-52 | 16 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.546 | 18 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-23 | 19 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MDPLMLKEEK GEAFLRSIPP GYRFKPRDDE IINFYLRPKI FGLPLPPNRI KEVFLYNYDP 60 QTLTAMSNNA LSNGVGNEYY FFTPRDRKYA NGSRPARNAG NGYWKATGAD KLICRKGKKI 120 GLKKSLVFYQ GKPPKGVKTN WLMHEYVLTD APIRKRLGNE DMRLDDWVLC RLYKNLREKR 180 LKHETLQEGH QEEAQAEADT SAIVAYDGAQ MVQQEGHQVE SEAEADTSEI LPYNGTQMVE 240 NGIAFAPLYE PINTSSQMLE HGIAFAPLYE PINTSSQMLE NGIAFAPLYE PIDYGVFEPA 300 LFMQQHFSSD LDLDQFNQDP HTGLPPPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-51 | 5 | 179 | 3 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847249 | 0.0 | KC847249.1 Gossypium hirsutum NAC domain protein NAC72 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017604773.1 | 1e-117 | PREDICTED: uncharacterized protein LOC108451615 | ||||
TrEMBL | A0A0D2UYM4 | 0.0 | A0A0D2UYM4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G271300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17827 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 3e-53 | NAC-like, activated by AP3/PI |