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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_A10G2018 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
TALE |
| Protein Properties |
Length: 276aa MW: 30954.1 Da PI: 7.276 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A10G2018 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 32.3 | 1.6e-10 | 106 | 143 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
Fe ++yps +e+ LA+++gL+ +qV++WF N R +
Gh_A10G2018 106 FEHflHPYPSDTEKLMLAQQTGLSRTQVSNWFINARVR 143
665559******************************98 PP
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| 2 | BELL | 48.4 | 2.3e-16 | 1 | 42 | 30 | 71 |
BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71
+q v+ssF++v glg+a+pY+ +A ka+++hF cLk+ai +q
Gh_A10G2018 1 MQSVVSSFKCVSGLGNAAPYVCFAFKAVAKHFSCLKNAILDQ 42
9**************************************988 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MQSVVSSFKC VSGLGNAAPY VCFAFKAVAK HFSCLKNAIL DQTQFAGKTV SIVNNGGVDK 60
VNVPGVWTSD QQGINNQNPI FLHHPLWRSQ RGLPDHAVAV LKTWLFEHFL HPYPSDTEKL 120
MLAQQTGLSR TQVSNWFINA RVRLWKPMVE EIHNLELRQA QIQTQTTNQD PKLPHFITSQ 180
EVQNVQTKRP RNEAVYDEET ELQKSTSPCI DQIPSNQHNN IGVGGTSGFC LALCLNQNNG 240
VELEQQPLLP MNLCHNFRLE SDGELSLKPG FDVGRQ
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269|PubMed:12874117}. |
| Uniprot | TISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Pabón-Mora N,Wong GK,Ambrose BA
Evolution of fruit development genes in flowering plants.
Front Plant Sci, 2014. 5: p. 300
[PMID:25018763] - Khan M, et al.
Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
Plant Physiol., 2015. 169(3): p. 2166-86
[PMID:26417006] - Andrés F, et al.
Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
Plant Physiol., 2015. 169(3): p. 2187-99
[PMID:26417007] - Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
Dev. Cell, 2016. 39(2): p. 198-208
[PMID:27666746] - Sehra B,Franks RG
Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
Front Plant Sci, 2017. 8: p. 1712
[PMID:29085379] - Simonini S,Stephenson P,Østergaard L
A molecular framework controlling style morphology in Brassicaceae.
Development, 2018.
[PMID:29440299]
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