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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G1704 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 27717.9 Da PI: 8.5008 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs++ L H++ H Gh_A10G1704 85 FSCNFCNRVFSTSQALGGHQNAH 107 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.2E-5 | 79 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.88E-7 | 82 | 112 | No hit | No description |
Pfam | PF13912 | 8.6E-6 | 84 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.843 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVLILEDPSE VVSTKSADMA GSVPQQKLSS VVLDLMLSNR DDDGDDNGGA KPRRESKIEL 60 DLFTPRSPTN SSQHDGDHHD KSKVFSCNFC NRVFSTSQAL GGHQNAHKQE RALAKRRHQG 120 LMEVNPSRTF GTPNLPYHPF SAFPSNPFQE SYNRSPLSVR YESMVRKPTH PWPSMPSSLS 180 RQYHVPHGWS SSRQALMSLI QPSLSFNNGG LGMPGASTSA NLGLGQANVA MNRGSEGSDN 240 QCKDGAGIDL SLKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017617970.1 | 1e-173 | PREDICTED: zinc finger protein 6-like | ||||
TrEMBL | A0A2P5XHL0 | 1e-171 | A0A2P5XHL0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G221900.1 | 1e-163 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20134 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 1e-17 | C2H2 family protein |