PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1672
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 371aa    MW: 40918.4 Da    PI: 10.0345
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1672genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.23.3e-1650133186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  v  L+ea+++++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ + +++++      s++p++ +l+
  Gh_A10G1672  50 EWSEGAVSSLLEAYENKWVLRNRAKLKGHDWEDVARYVsaraNCTKSPKTQTQCKNKIESMKKRYRSESATAEG------SSWPLYPRLD 133
                  5*************************************844444455556679****************99997......4699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1948133No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDKETNNQEN PSLLSNNNTN KEDCSPKKHP GSSTVTGGGG GSNDRLKRDE WSEGAVSSLL  60
EAYENKWVLR NRAKLKGHDW EDVARYVSAR ANCTKSPKTQ TQCKNKIESM KKRYRSESAT  120
AEGSSWPLYP RLDLLLRGNA AAAAAAPSPP PLQPLPPPPQ QLHLTAMVQP QPPGPLFTNL  180
PLTLPEASTL VVLQQQQQQQ PPPPLPIAAP PPALAPQGLG TAQNSHGSNG FEKIPKDDGA  240
GTKVSDHLSD KVAIETDSST PGLYSDKEKL RSKKLKMKTM ENKKKKRRKK EEYREIGESI  300
RILAEVVLKS EESRMETLRE IEKMRIEAET KRGEMELKRT EIIANTQLEI AKLFAGSSNK  360
GIDPSLRIGR S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282287KKKKRR
2282289KKKKRRKK
3283287KKKRR
4283288KKKRRK
5283289KKKRRKK
6284288KKRRK
7284289KKRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.102800.0boll| ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9642361e-152JX964236.1 Gossypium hirsutum clone NBRI_TRANS-505 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677047.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1U8IG070.0A0A1U8IG07_GOSHI; Trihelix transcription factor
STRINGGorai.011G216400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98592533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.18e-93sequence-specific DNA binding transcription factors