PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A10G1498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 21312.8 Da PI: 10.1709 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7.2e-05 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F+++ L H++ H Gh_A10G1498 48 FECQYCHRGFPNSQALGGHQNAH 70 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.1E-6 | 44 | 75 | No hit | No description |
Pfam | PF13912 | 4.1E-6 | 47 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.365 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MSKAAISMSR SASENNGAGD ETGRNNQSSK LKLFGFPVAA TPCDNRRFEC QYCHRGFPNS 60 QALGGHQNAH KRERRAKLAS SFTAHHHQRF VTTGHVITAH SFRSRPSLYA RSGFTNLSPS 120 DEHAVVFRGP SPSCTPIILR GPRPLHVVGA QPSEGPFLVV QTEVGVGSTL DSLVAADVNE 180 EGNIDLRLRL PPSGTAST |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016676643.1 | 1e-144 | PREDICTED: uncharacterized protein LOC107895977 | ||||
TrEMBL | A0A1U8IJS9 | 1e-142 | A0A1U8IJS9_GOSHI; uncharacterized protein LOC107895977 | ||||
STRING | Gorai.011G195500.1 | 1e-121 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24706 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58070.1 | 3e-13 | C2H2 family protein |