PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G1402 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 731aa MW: 82019.6 Da PI: 6.6393 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.3 | 1.1e-21 | 186 | 286 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++ +++a+++ ++++ + +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + ++e Gh_A10G1402 186 FCKTLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELIATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGANGE 279 99****************************975444444..8************************************************..348999 PP .EEEEE- CS B3 92 lvvkvfr 98 l+v+v+r Gh_A10G1402 280 LRVGVRR 286 9***997 PP | |||||||
2 | Auxin_resp | 113.5 | 2e-37 | 312 | 394 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+s+F+++Y+Pr+s seF+v+v+k+++a ++k+svGmRfkm+fe+e+ +err+sGt+vgv+d +++ W +S+WrsLk Gh_A10G1402 312 ASHALSTRSMFSIFYKPRTSLSEFIVSVNKFLEAQSHKLSVGMRFKMRFEGEEIPERRFSGTIVGVEDNKSSAWADSEWRSLK 394 789******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-42 | 175 | 315 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-40 | 183 | 301 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.37E-20 | 184 | 286 | No hit | No description |
PROSITE profile | PS50863 | 11.039 | 186 | 288 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-19 | 186 | 286 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.9E-21 | 186 | 288 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-34 | 312 | 394 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.4E-12 | 602 | 698 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.956 | 608 | 701 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.09E-11 | 610 | 685 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 731 aa Download sequence Send to blast |
KREEEIRAKN KRKNLERECL CVRKRTEKEA AIAKRALVGF DRTLTQTNLF TLLNREHSKG 60 VSMAFPASEI PSAEQQADDP LYRELWHACA GPLVTLPRVG ERVYYFPQGH MEQLEASMHQ 120 GLEHQMPSFD LPSKILCKVA SVQRKAEPDT DEVYAQITLV PEVDQSEVMS PDDPLQEPER 180 CIVHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMTQQ PPWQELIATD LHGNEWHFRH 240 IFRGQPRRHL LTTGWSVFVS SKKLVAGDAF IFLRGANGEL RVGVRRLMRQ QANMPSSVIS 300 SHSMHLGVLA TASHALSTRS MFSIFYKPRT SLSEFIVSVN KFLEAQSHKL SVGMRFKMRF 360 EGEEIPERRF SGTIVGVEDN KSSAWADSEW RSLKVQWDEP SSIIRPDRVS PWELEPLVAT 420 SNSSISQPAQ RNKRARPPVL PSPSSDLSSL GIWKSPVESP FSYCDAQRGH PSPKLSSAAK 480 PNSVGFNRNS SLAAVSSSSM YWPNRVENVT ESVAPVVNKE SSERKQGTGN GCRLFGIQLL 540 DKINMEENSP LATISGTGVD DQPLHSLDAN SDQQSDPSNL NQSDLPSISC EPEKCLRSPQ 600 ESQSKQIRSC TKVHMQGMAV GRAVDLTRFD CYEDLLKKLE YMFDIKGQLC GSTKNWQVVY 660 TDDEDDMMMV GDDPWNEFCS MVRKIFIYTS EEVRKLSPKI KLPVNDDDDD SKATKAGVDT 720 VINPEDRSSG T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 79 | 423 | 17 | 361 | Auxin response factor 1 |
4ldw_A | 0.0 | 79 | 423 | 17 | 361 | Auxin response factor 1 |
4ldw_B | 0.0 | 79 | 423 | 17 | 361 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.12527 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ153983 | 0.0 | DQ153983.1 Gossypium barbadense auxin response factor 1 (ARF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016677363.1 | 0.0 | PREDICTED: auxin response factor 1-like | ||||
Refseq | XP_016677364.1 | 0.0 | PREDICTED: auxin response factor 1-like | ||||
Refseq | XP_016677365.1 | 0.0 | PREDICTED: auxin response factor 1-like | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A1U8IH00 | 0.0 | A0A1U8IH00_GOSHI; Auxin response factor | ||||
STRING | Gorai.011G091100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8825 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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