PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1028
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 357aa    MW: 41534.8 Da    PI: 6.2613
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1028genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.4e-36421342103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+i++d++++++isw + +nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv++++         weF++++F +gk++ll++i+
   Gh_A10G1028  42 FLTKTYDIIDDSSTNNIISWGRANNSFIVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFANENFLRGKRHLLKNIR 129
                   9********************999******************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Gh_A10G1028 130 RRKTH 134
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.94E-3538131IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.2E-3838131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-5838131IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-184265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-1893105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNPYGRVKEE FPGASSSYPA GMPSMVTAQQ MKGLHDAGPP PFLTKTYDII DDSSTNNIIS  60
WGRANNSFIV WDPQAFSMTL LPRFFKHNNF SSFVRQLNTY GFRKVDTDRW EFANENFLRG  120
KRHLLKNIRR RKTHQPQASQ YALDHCVEVG RFGLDGEIDR LRRDKQVLMV ELVKLRQQQQ  180
NTRTCLLAVE KRLRKTEMKQ QQMMSFLAKA MQNPSFVQQL IQHNDRSKEL EEAITKKRQR  240
RIDQRSMDVE TSELLGAKTE PKCYDVAEFE VTELDKLFMN LQRLTGSQNN IELEHVEESK  300
DHGSKGKSLD EGFWDDLMDG DTHDIDQEIS VLDVEEEDEQ YLDVLVEQLR YLGSSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-243313317131Heat shock factor protein 1
5d5v_B3e-243313317131Heat shock factor protein 1
5d5v_D3e-243313317131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674170.0KR067417.1 Gossypium hirsutum HSF36 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677876.10.0PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_016677877.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-129HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1U8IIG60.0A0A1U8IIG6_GOSHI; heat stress transcription factor A-6b-like
STRINGGorai.011G168400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-123heat shock transcription factor A6B
Publications ? help Back to Top
  1. Wang J,Sun N,Deng T,Zhang L,Zuo K
    Genome-wide cloning, identification, classification and functional analysis of cotton heat shock transcription factors in cotton (Gossypium hirsutum).
    BMC Genomics, 2014. 15: p. 961
    [PMID:25378022]