 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_A10G0884 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
WOX |
| Protein Properties |
Length: 289aa MW: 32200.4 Da PI: 6.508 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A10G0884 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.9 | 9.4e-20 | 32 | 93 | 2 | 57 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
++R+t+t++q+++L++l+++ r psa+++++++++l +++ ++V++WFqN++a+e++
Gh_A10G0884 32 STRWTPTTDQIRILKDLYYNngVRSPSADQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 93
58*****************8678*************************************97 PP
|
| 2 | Wus_type_Homeobox | 114.3 | 6e-37 | 31 | 95 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
++tRWtPt++Qi+iL++ly+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
Gh_A10G0884 31 SSTRWTPTTDQIRILKDLYYnNGVRSPSADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 95
789***************9779*****************************************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MEPQHQHQQP HPNDDNSSGG SGKGSFLCRQ SSTRWTPTTD QIRILKDLYY NNGVRSPSAD 60
QIQRISARLR QYGKIEGKNV FYWFQNHKAR ERQKKRFTST PDILPMQTPI LANATRKPDD 120
SLHNHKYPTI TPGYAPSSPP STGVLTVGQI GHYGYGSMTM EKSFRDCSIS ACGSSSGGAS 180
HNLGWVGMDP AYTTSSYAFF DKKKLFGEEQ EGDEEEEEEE GAAVAPHIET LPLFPMHGED 240
INAFCSNMKP QSADSCYSSW YRSDDGYTAS RASLELSLNS YNARSQDSI
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269|PubMed:12208843}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015043 | 6e-78 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
