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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G0840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 530aa MW: 59511.8 Da PI: 8.4758 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.7 | 1.6e-16 | 154 | 247 | 10 | 98 |
HHHT.....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlks.....grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ++ ++l +p++f + + +k+++ ++l d++g+sW k+ +++++ + l +GW Fv++++L++gD++ F+l++ ++ +++v++f+ Gh_A10G0840 154 YVSHnpkhsCILGIPREFSRLF-LKQNG--NVVLCDSNGKSWAAKYATslgSNQRSYVRLCNGWGAFVRDKNLQVGDVCAFELINCKQISFKVSIFE 247 3333355569********9555.55444..6***************776655555558899**********************97688888888886 PP | |||||||
2 | B3 | 50.1 | 4.9e-16 | 298 | 395 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 + v +++++ +++ l+++++fa++h ++ +s+++ l ++g+sW k+ +++++ + GWk Fv++n+L+ gD++v++++++ ++ +++v + Gh_A10G0840 298 LVVVLRPSYIRTDALCISNHFARKHFESDLTSVDVNLCLSNGKSWPAKYLRrsIGNPNGK-ICHGWKAFVNDNNLQPGDVCVLEMTNHaTKISFKVII 394 56667788888889***********7777899*****************44344444444.556********************88655666666665 PP E CS B3 97 f 97 f Gh_A10G0840 395 F 395 5 PP | |||||||
3 | B3 | 43.9 | 4.3e-14 | 442 | 526 | 10 | 97 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +lk++r +p f+e++ ++ +++ ++ ++rsW vk+ + + ++ +t+GW eF+++n L+egD++v +ld + + l+v + Gh_A10G0840 442 HLKEKRAGIPFGFVEQYLKP---NMEAVILKVENRSWPVKIASNPQNRQARFTNGWIEFARENFLREGDVCVYELDAVKHGLLNVCIS 526 56677899*********655...46788888999*******99999999**************************9888887777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.44E-10 | 1 | 47 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.25 | 1 | 40 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.79E-8 | 1 | 38 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.1E-11 | 1 | 53 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.1E-22 | 137 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-21 | 140 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.23E-20 | 144 | 246 | No hit | No description |
SMART | SM01019 | 8.8E-12 | 146 | 249 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.169 | 150 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-13 | 160 | 247 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.37E-19 | 291 | 396 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 291 | 397 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.23E-20 | 296 | 396 | No hit | No description |
SMART | SM01019 | 9.6E-13 | 297 | 398 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-15 | 297 | 396 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.407 | 297 | 398 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.6E-18 | 427 | 527 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.47E-15 | 429 | 523 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.93E-15 | 432 | 527 | No hit | No description |
SMART | SM01019 | 6.4E-10 | 433 | 529 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.943 | 433 | 529 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-12 | 442 | 526 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MWLQDGWQNF AEHYSVEPGH FLVFRYEGHC HFHVIIFDRT ATEIEYPDVN DNEGTQKQEV 60 KIKQESEDDE PVSIMNEISH GLREKPGLQC PRPHKTMKSE PMLSGFSAGT GRGEMESTTA 120 SKVTSNEKFM VLQRVASAFQ STNPFFLVLM QPTYVSHNPK HSCILGIPRE FSRLFLKQNG 180 NVVLCDSNGK SWAAKYATSL GSNQRSYVRL CNGWGAFVRD KNLQVGDVCA FELINCKQIS 240 FKVSIFEGKK SGFHGSPPST DGYFPAKRES GTSFTQPLKA RETALEKALA FTSENPFLVV 300 VLRPSYIRTD ALCISNHFAR KHFESDLTSV DVNLCLSNGK SWPAKYLRRS IGNPNGKICH 360 GWKAFVNDNN LQPGDVCVLE MTNHATKISF KVIIFKAIAD ANSHPLEGVS QKPLGLTSQS 420 LKAATEMTST PPFFRSVVLP LHLKEKRAGI PFGFVEQYLK PNMEAVILKV ENRSWPVKIA 480 SNPQNRQARF TNGWIEFARE NFLREGDVCV YELDAVKHGL LNVCISKSDD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017647805.1 | 0.0 | PREDICTED: B3 domain-containing protein LOC_Os12g40080-like | ||||
TrEMBL | A0A2P5XX26 | 0.0 | A0A2P5XX26_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G103800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18343 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-24 | B3 family protein |