PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 530aa    MW: 59511.8 Da    PI: 8.4758
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0840genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-161542471098
                  HHHT.....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  10 vlks.....grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  + ++     ++l +p++f + + +k+++   ++l d++g+sW  k+     +++++ + l +GW  Fv++++L++gD++ F+l++ ++ +++v++f+
  Gh_A10G0840 154 YVSHnpkhsCILGIPREFSRLF-LKQNG--NVVLCDSNGKSWAAKYATslgSNQRSYVRLCNGWGAFVRDKNLQVGDVCAFELINCKQISFKVSIFE 247
                  3333355569********9555.55444..6***************776655555558899**********************97688888888886 PP

2B350.14.9e-16298395297
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                  + v +++++ +++ l+++++fa++h ++  +s+++ l  ++g+sW  k+     +++++  +  GWk Fv++n+L+ gD++v++++++ ++ +++v +
  Gh_A10G0840 298 LVVVLRPSYIRTDALCISNHFARKHFESDLTSVDVNLCLSNGKSWPAKYLRrsIGNPNGK-ICHGWKAFVNDNNLQPGDVCVLEMTNHaTKISFKVII 394
                  56667788888889***********7777899*****************44344444444.556********************88655666666665 PP

                  E CS
           B3  97 f 97 
                  f
  Gh_A10G0840 395 F 395
                  5 PP

3B343.94.3e-144425261097
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  +lk++r  +p  f+e++ ++   +++ ++   ++rsW vk+  + + ++  +t+GW eF+++n L+egD++v +ld  + + l+v + 
  Gh_A10G0840 442 HLKEKRAGIPFGFVEQYLKP---NMEAVILKVENRSWPVKIASNPQNRQARFTNGWIEFARENFLREGDVCVYELDAVKHGLLNVCIS 526
                  56677899*********655...46788888999*******99999999**************************9888887777775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-10147IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.25140IPR003340B3 DNA binding domain
CDDcd100176.79E-8138No hitNo description
Gene3DG3DSA:2.40.330.106.1E-11153IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-22137247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-21140246IPR015300DNA-binding pseudobarrel domain
CDDcd100179.23E-20144246No hitNo description
SMARTSM010198.8E-12146249IPR003340B3 DNA binding domain
PROSITE profilePS5086313.169150249IPR003340B3 DNA binding domain
PfamPF023621.2E-13160247IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-19291396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-20291397IPR015300DNA-binding pseudobarrel domain
CDDcd100179.23E-20296396No hitNo description
SMARTSM010199.6E-13297398IPR003340B3 DNA binding domain
PfamPF023624.7E-15297396IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407297398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-18427527IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-15429523IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-15432527No hitNo description
SMARTSM010196.4E-10433529IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943433529IPR003340B3 DNA binding domain
PfamPF023625.1E-12442526IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MWLQDGWQNF AEHYSVEPGH FLVFRYEGHC HFHVIIFDRT ATEIEYPDVN DNEGTQKQEV  60
KIKQESEDDE PVSIMNEISH GLREKPGLQC PRPHKTMKSE PMLSGFSAGT GRGEMESTTA  120
SKVTSNEKFM VLQRVASAFQ STNPFFLVLM QPTYVSHNPK HSCILGIPRE FSRLFLKQNG  180
NVVLCDSNGK SWAAKYATSL GSNQRSYVRL CNGWGAFVRD KNLQVGDVCA FELINCKQIS  240
FKVSIFEGKK SGFHGSPPST DGYFPAKRES GTSFTQPLKA RETALEKALA FTSENPFLVV  300
VLRPSYIRTD ALCISNHFAR KHFESDLTSV DVNLCLSNGK SWPAKYLRRS IGNPNGKICH  360
GWKAFVNDNN LQPGDVCVLE MTNHATKISF KVIIFKAIAD ANSHPLEGVS QKPLGLTSQS  420
LKAATEMTST PPFFRSVVLP LHLKEKRAGI PFGFVEQYLK PNMEAVILKV ENRSWPVKIA  480
SNPQNRQARF TNGWIEFARE NFLREGDVCV YELDAVKHGL LNVCISKSDD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647805.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A2P5XX260.0A0A2P5XX26_GOSBA; Uncharacterized protein
STRINGGorai.011G103800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-24B3 family protein