 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A10G0774 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 286aa MW: 31644.8 Da PI: 4.5239 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A10G0774 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.1 | 3.4e-19 | 60 | 113 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe ++++ +++ +LA++lgL+ rqV vWFqNrRa++k
Gh_A10G0774 60 KKRRLSVDQVKALEKNFEVENKLEPDRKSKLAQELGLQPRQVAVWFQNRRARWK 113
4558999**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 128 | 4e-41 | 60 | 151 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
kkrrls +qvk+LE++Fe e+kLep+rK++la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk + ++L++e+e+L ++++e
Gh_A10G0774 60 KKRRLSVDQVKALEKNFEVENKLEPDRKSKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKTSYESLKLNYSNLRHENEDLLKQISE 151
9**************************************************************************************99976 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MKRLGSSDSL SALMSICPTS DERSPRNNNV YSREFQSMLE GFDEEGCFEE LTVGHGGGAK 60
KRRLSVDQVK ALEKNFEVEN KLEPDRKSKL AQELGLQPRQ VAVWFQNRRA RWKTKQLERD 120
YGVLKTSYES LKLNYSNLRH ENEDLLKQIS ELKAKLIEPP PGSSLGTSLE PAEVNCESFN 180
DGGGNGSVGG GGDTVFPDLK DGSSDSDSSA ILNEENNSGG DMEGGSPNNG AASSPSSMNN 240
CFQLFKTTYQ TPQFVKMEEH DFISSTADEV CNFFSDEQAP SLQWWI
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 107 | 115 | RRARWKTKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX964398 | 3e-61 | JX964398.1 Gossypium hirsutum clone NBRI_TRANS-667 microsatellite sequence. |
