PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A10G0724

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 612aa MW: 67700.3 Da PI: 7.8699

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G0724	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.8	3.3e-16	196	233	2	39
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +++gC+Ckks+Clk+YCeCf+a ++Cs++CkC dCkN Gh_A10G0724 196 HERGCHCKKSECLKRYCECFQASVFCSQNCKCVDCKNF 233 889**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	29.699	112	235	IPR005172	CRC domain
SMART	SM01114	0.047	121	150	IPR033467	Tesmin/TSO1-like CXC domain
SMART	SM01114	1.3E-16	195	236	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.7E-13	198	233	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence Send to blast
MKQLEIENGD FPPKRVELVT LTSTPYYQPK GIKSVEKTSD SVKITVTERS SSHFPPKKNL 60 ARQLVFTEFG LSPIISTSSP LPVEKPSSEM HLSPRSPFSS IVVHFNAFSF QRFNLSEISH 120 AQIDRYCDCF ASGEYCNGCT CADCCNNVEN EDLRKVAIEI ILERNPRAFK PKISSSPCSP 180 QDIEGDKIDS PQVGRHERGC HCKKSECLKR YCECFQASVF CSQNCKCVDC KNFEACKELI 240 TASCKEDSTS IICKNSEGCY GRIASYHMDN ASRKLYKSFK GSEGLMAITG GDCIDTKIYI 300 QRVITTTTSD ATGLSGQRLS QESRKRKLQE LPSNEKISPS QSFSDLQKVI RQRSSSPSST 360 LSVDPTCHII NSAMVGSLRD PYRLTVANVY HLLDTSKVCS GLAVLAEAAA LAQAANLFAE 420 VKDGEENKNG DILGAKEDDY QERPAQVQKR AADDLNLGFA AKDVQEGRAS LPGMVGLICN 480 EKHKQLMEPT SGDQILNRNL KNAYAEQERS VLSSFLDFLE KLIISKNMKM MLFYSPFIIF 540 FLFTGQISAS MICKNSEGRD GRIANTQMGN AENRNRSLAQ LDAELLAAVI ILKLMIKKNV 600 GTFICAGITG LN

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence Send to blast

MKQLEIENGD FPPKRVELVT LTSTPYYQPK GIKSVEKTSD SVKITVTERS SSHFPPKKNL  60
ARQLVFTEFG LSPIISTSSP LPVEKPSSEM HLSPRSPFSS IVVHFNAFSF QRFNLSEISH  120
AQIDRYCDCF ASGEYCNGCT CADCCNNVEN EDLRKVAIEI ILERNPRAFK PKISSSPCSP  180
QDIEGDKIDS PQVGRHERGC HCKKSECLKR YCECFQASVF CSQNCKCVDC KNFEACKELI  240
TASCKEDSTS IICKNSEGCY GRIASYHMDN ASRKLYKSFK GSEGLMAITG GDCIDTKIYI  300
QRVITTTTSD ATGLSGQRLS QESRKRKLQE LPSNEKISPS QSFSDLQKVI RQRSSSPSST  360
LSVDPTCHII NSAMVGSLRD PYRLTVANVY HLLDTSKVCS GLAVLAEAAA LAQAANLFAE  420
VKDGEENKNG DILGAKEDDY QERPAQVQKR AADDLNLGFA AKDVQEGRAS LPGMVGLICN  480
EKHKQLMEPT SGDQILNRNL KNAYAEQERS VLSSFLDFLE KLIISKNMKM MLFYSPFIIF  540
FLFTGQISAS MICKNSEGRD GRIANTQMGN AENRNRSLAQ LDAELLAAVI ILKLMIKKNV  600
GTFICAGITG LN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-21	126	234	25	122	Protein lin-54 homolog
5fd3_B	2e-21	126	234	25	122	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017639890.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 6
TrEMBL	A0A2P5YB90	0.0	A0A2P5YB90_GOSBA; Uncharacterized protein
STRING	Gorai.011G074200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22196	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20110.2	2e-48	Tesmin/TSO1-like CXC domain-containing protein