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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_A10G0471 |
| Common Name | CBF17 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
ERF |
| Protein Properties |
Length: 390aa MW: 43663.4 Da PI: 4.6954 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A10G0471 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 60.9 | 3e-19 | 120 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g
Gh_A10G0471 120 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 169
69*******.**********954...4************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0070483 | Biological Process | detection of hypoxia |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005886 | Cellular Component | plasma membrane |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MCGGAIISDF IPPSRSRRLT ADFLWPDLKK SGLKKGSGKR YSKPVIDLGD DFETDFQEFK 60
DEESDIDDYD VDDVLADVKP FAFNATKKPA SAVSHGSNSE KSMQFNGQAE KCAKRKRKNQ 120
YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DAEARRIRGK KAKVNFPNET 180
PRTSPKCAVK TNSQKPLSKS NLSPVQLNLN QNYNYLSQPE QEYFDTMGFV EEKPLVNQFA 240
YVDPVPTSID AGFNQSDNAP LYFNSDQGSN SINCSDYGWG EQGARTPEIS SILEASVVGE 300
EFLEDANPSK KLKPSSDNLM HAEENSAKTL SDELLALDNQ MKYFQMPPFI EGNWDATIDA 360
FLNGDATQDG GNPMDLWNFD DFPAMAEGVF
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gcc_A | 3e-21 | 120 | 177 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
| 5wx9_A | 6e-21 | 119 | 179 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in seedlings, leaves, flowers, siliques and germinating seeds. {ECO:0000269|PubMed:22020282}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY781117 | 0.0 | AY781117.2 Gossypium hirsutum ethylene-responsive element binding protein ERF2 mRNA, complete cds. |
| GenBank | KP780200 | 0.0 | KP780200.1 Gossypium hirsutum C-repeat binding factor 17 (CBF17) mRNA, complete cds. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kosmacz M, et al.
The stability and nuclear localization of the transcription factor RAP2.12 are dynamically regulated by oxygen concentration.
Plant Cell Environ., 2015. 38(6): p. 1094-103
[PMID:25438831] - Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
Plant Sci., 2015. 236: p. 37-43
[PMID:26025519] - Gasch P, et al.
Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
Plant Cell, 2016. 28(1): p. 160-80
[PMID:26668304] - Gonzali S, et al.
Universal stress protein HRU1 mediates ROS homeostasis under anoxia.
Nat Plants, 2015. 1: p. 15151
[PMID:27251529] - Paul MV, et al.
Oxygen Sensing via the Ethylene Response Transcription Factor RAP2.12 Affects Plant Metabolism and Performance under Both Normoxia and Hypoxia.
Plant Physiol., 2016. 172(1): p. 141-53
[PMID:27372243] - Shahzad Z, et al.
A Potassium-Dependent Oxygen Sensing Pathway Regulates Plant Root Hydraulics.
Cell, 2016. 167(1): p. 87-98.e14
[PMID:27641502] - Yao Y, et al.
ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis.
New Phytol., 2017. 213(4): p. 1667-1681
[PMID:28164334] - Giuntoli B,Licausi F,van Veen H,Perata P
Functional Balancing of the Hypoxia Regulators RAP2.12 and HRA1 Takes Place in vivo in Arabidopsis thaliana Plants.
Front Plant Sci, 2017. 8: p. 591
[PMID:28487707] - Yao Y,Chen X,Wu AM
ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
Plant Signal Behav, 2017. 12(6): p. e1329073
[PMID:28537474] - Eysholdt-Derzsó E,Sauter M
Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
Plant Physiol., 2017. 175(1): p. 412-423
[PMID:28698356] - Giuntoli B, et al.
Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana.
Plant Cell Environ., 2017. 40(10): p. 2333-2346
[PMID:28741696]
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