PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Gh_A10G0248

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 223aa MW: 25892.9 Da PI: 8.1501

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G0248	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	104.3	1e-32	24	128	2	103
HHHHHHHHHC............TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 Flkklyeile............deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 Fl k+y +le +++ k+++sw+++g+ fvv+ + ef++ Lp+yFkh+nf+SF+RQLn+YgFkk+++++ weFkh++F Gh_A10G0248 24 FLAKTYALLEegeeeesgeegcSRRRKKIVSWNDEGTGFVVWSPAEFSDLTLPRYFKHNNFSSFIRQLNTYGFKKTSSRR---------WEFKHEKF 111 99******6666555555555599**********************************************9998.........**** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkkse 103 ++g k++l +i rkkse Gh_A10G0248 112 QRGYKQMLMEITRKKSE 128 ************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.4E-34	15	120	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.3E-40	20	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.39E-26	20	125	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.6E-28	24	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MMSNKMSSNY SSLSSPKAKG PAPFLAKTYA LLEEGEEEES GEEGCSRRRK KIVSWNDEGT 60 GFVVWSPAEF SDLTLPRYFK HNNFSSFIRQ LNTYGFKKTS SRRWEFKHEK FQRGYKQMLM 120 EITRKKSEPS VFPAFLKASS SSDDHQDHHH HHHHQIMNDG SSAVDEESTN VHRQTLIEEN 180 QNLRREKVEL QTQIAQFKDL QIKLLDCIAQ HTGTSDHKET RLC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-15	1	125	3	129	Heat shock factor protein 1
5d5v_B	2e-15	1	125	3	129	Heat shock factor protein 1
5d5v_D	2e-15	1	125	3	129	Heat shock factor protein 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR067414	0.0	KR067414.1 Gossypium hirsutum HSF33 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001314174.1	1e-132	heat stress transcription factor B-1-like
TrEMBL	A0A1U8LCB4	1e-167	A0A1U8LCB4_GOSHI; heat stress transcription factor B-1-like
STRING	Gorai.011G027400.1	1e-129	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16597	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	4e-34	heat shock factor 4

Publications ? help Back to Top
Wang J,Sun N,Deng T,Zhang L,Zuo K Genome-wide cloning, identification, classification and functional analysis of cotton heat shock transcription factors in cotton (Gossypium hirsutum). BMC Genomics, 2014. 15: p. 961 [PMID:25378022]