PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0200
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 883aa    MW: 97000 Da    PI: 7.7791
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0200genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18336435198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  +++lv+
  Gh_A10G0200 336 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDVVTFSRLE-PGGKLVM 431
                  89**************************555566778***************9989999999***9.********************665.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Gh_A10G0200 432 GFRK 435
                  7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-31331443IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-20333435IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-22334435No hitNo description
SMARTSM010194.7E-20336437IPR003340B3 DNA binding domain
PfamPF023629.2E-16336435IPR003340B3 DNA binding domain
PROSITE profilePS5086311.194336437IPR003340B3 DNA binding domain
PROSITE profilePS5105014.58563613IPR011124Zinc finger, CW-type
PfamPF074961.3E-12568610IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MTSTSVATSS SRICFNSVCN DLKSERPRKG WRLRTGELAE LCDRCASIYD EGRFCDTFHL  60
NASGWRTCES CGKRVHCGCI VSAYAFALLD AGGILCIACS RKNAVLGPNS SWPPSLLFNS  120
SLPERFKDCS AKGWSQLTGS GPAPWRQAPG LFNSSTPQPE LHSRVPYEVD LSTGIDRLNV  180
SERLSIPSLE KKKNEDFPER LMNGSLKPSA HDIHENGNTG INCEEQHTSC LTKPQDSSNP  240
PFGLAVPYTS IDEANGQMGV SGTPLRPNPQ PSLAKQFHSN PHNGLDSSGE TQMRNGRPRP  300
DGRGRNQLFP RYWPRFTDQD LQQISADSNC IITPLFEKML SASDAGRIGR LVLPKKCAEA  360
YFPPISQPEG LPLKVQDSKG KEWIFQFRFW PNNNSRMYVL EGVTPCIQNM QLQAGDVVTF  420
SRLEPGGKLV MGFRKASAAS ASEQENEAKN SNGVSTHGDA ELADPSSWSK VDKSGYIAKE  480
ALGTKVAVPR KRKNSVLGSK SKRLRIDNED MIELKLTWEE AQGLLRPPPN HVANVVSIEG  540
FEFEEYGDAP VLGKPTIFAT DKSGEKIQWA QCEDCFKWRR LPSDVLLPSK WTCSSNSWDP  600
ERSSCSATQE LTAEELENLL PHCNPAASKK MKVAKQESEN VDALEGLDTL ANLAILGEGG  660
VLPASSQATT KHPRHRPGCS CIVCIQPPSG KGPKHKQTCT CNVCQTVKRR FRTLMLRREK  720
KQSQKEADAT RKKQQPSLPD KVVDDEPLPC TTSAGNSSPN QKKVVSENLD DDTNRLKSSS  780
SPFKGQIDLN IQPEREEELS PGSDSGGTMR LLQDATDKYH RQQSILSSSG NSNIEVTQTQ  840
PGSGTELEKI NSSIDLRASH RDADMDHPAI FPIKTFAPTS ATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-643144391126B3 domain-containing transcription repressor VAL1
5yzz_C2e-643144391126B3 domain-containing transcription repressor VAL1
5z00_C2e-643144391126B3 domain-containing transcription repressor VAL1
5z00_G2e-643144391126B3 domain-containing transcription repressor VAL1
5z00_K2e-643144391126B3 domain-containing transcription repressor VAL1
5z00_M2e-643144391126B3 domain-containing transcription repressor VAL1
6j9a_A2e-643144392127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.200610.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6149023e-48JX614902.1 Gossypium hirsutum clone NBRI_GE58616 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711287.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1U8L9K60.0A0A1U8L9K6_GOSHI; B3 domain-containing protein Os07g0563300 isoform X2
STRINGGorai.011G022400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-150HSI2-like 1