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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G2371 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 406aa MW: 46412.8 Da PI: 6.7 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.2 | 1.9e-50 | 16 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+evd++k+ePw +++ + ++ ++ wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++ Gh_A09G2371 16 VPPGFRFHPTEEELLHYYLRKKVASQKIDL-NVIPEVDLNKLEPWGIQEkckvgSSSTPQNGWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIY 112 69****************************.99**************953544322335569************************************ PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + +gl+ktLvfykgrap+g+k+dW+mheyrl Gh_A09G2371 113 C-ELRRIGLRKTLVFYKGRAPHGKKSDWIMHEYRL 146 *.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-56 | 11 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.336 | 16 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-27 | 17 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MSSADMNLSI NGQSQVPPGF RFHPTEEELL HYYLRKKVAS QKIDLNVIPE VDLNKLEPWG 60 IQEKCKVGSS STPQNGWYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKI IYCELRRIGL 120 RKTLVFYKGR APHGKKSDWI MHEYRLDDDS NVQSSKTIGD SMAEDGWVVC RVFRKKNYQK 180 TLEDPKSSSS YTSPGPKAPM VFSGNEEVLD QVLQYMGKTC KMENDFFTST NNPRSFEENK 240 HEMFMHMPRL ESPTLPPFPI HSPLLDQETS FKPCYQSIDD TLITVTQPSS INQGDSGAYD 300 HHQTDSVIDD NNGSKNIWVN DWVTLDRFVA SQLNGQVETS KQQSYLSDPS VVFSLCHHDD 360 IQLSNIRLER SNQNSQVYSD EIDLWSLTKS SSPSSSLDPF NHCRYN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-49 | 13 | 177 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-49 | 13 | 177 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-49 | 13 | 177 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-49 | 13 | 177 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-49 | 13 | 177 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-49 | 13 | 177 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-49 | 13 | 177 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-49 | 13 | 177 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in various aboveground tissues undergoing thickening of the lignified secondary wall such as anthers, filaments of stamens, the base of carpels, styles, the boundaries between siliques and pedicels, the midrib of leaf veins, and inflorescence stems, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels, and xylary fibers (secondary xylem). {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614948 | 1e-100 | JX614948.1 Gossypium hirsutum clone NBRI_GE58687 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016717298.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-112 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A1U8LV41 | 0.0 | A0A1U8LV41_GOSHI; NAC domain-containing protein 43-like | ||||
STRING | Gorai.006G205300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-102 | NAC family protein |