PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G2267

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 758aa MW: 82353.8 Da PI: 6.2837

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G2267	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	421.6	6.7e-129	388	746	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lLl+cAeavs++++e a+++L +ls+l++p g++ qR+aayf eA++arl++s+ +++ lp+ + s ++++ ++a+++f+ +sP++kfsh+taN Gh_A09G2267 388 LTLLLQCAEAVSANNFEDANRMLLELSQLSTPFGTSAQRVAAYFSEAISARLVSSCLGICGGLPSIPPS--HTQKMVSAFQVFNGISPFVKFSHFTAN 483 579**********************************************************999887..5899999**************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 qaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g s e+le+tg+rL++fA++lg+pfef + va+++ +le+e+L+v+ Gh_A09G2267 484 QAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGT----SLEALEATGKRLSDFADKLGIPFEFCP-VADKVGNLEPERLNVS 576 **********************************************....9**********************.7*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 + Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE++ll++ei+ Gh_A09G2267 577 KTEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-GGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIR 667 ******9..999999999999....******************.789*************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+a g +r ++ ++++Wre+l+++GFkp++l +aa+qa lll +++sdgy++ e++g+l lgWkd L+++SaWr Gh_A09G2267 668 NVLALGGPSRSSEEVKFHNWREKLQQSGFKPISLAGNAATQATLLLGMFPSDGYTLVEDNGALKLGWKDLCLLTASAWR 746 ****************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.121	361	726	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-126	388	746	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MLMAACDLVG ENGGINGRNS NDESQMRSTM RKRMASEVAD YHRFPRRTQF VSDNNMACSF 60 MAATGASNNP NPLFNYSTMN MDNVNTIVPS ANFAALTSAG PAFLSTTASN FSCVDAVGTN 120 SPQPPAVCGF SGLPLFPPTE RNRNTAVASA AVTATSVNTT VPVSLAPISN SMDDSSATAW 180 IDGVIRDLIH TSSNVSIPQL IHNVREIIYP CNPNLAALLE YRLRSLMDPL ERRRKEAPPP 240 PLHLPEVSLA RHHSQQQQQQ GSSGLTLNLD SAIDSLPNYS LTEPCAMNQY LSWGITPLPI 300 SSNNQVSSSP SATTPPVPSL NQHHRAQGQP LVQENTSPVE KTTASTATVG TTTTAPTSTV 360 ETVQACNGRD RKEELRQQKR DEEGLHLLTL LLQCAEAVSA NNFEDANRML LELSQLSTPF 420 GTSAQRVAAY FSEAISARLV SSCLGICGGL PSIPPSHTQK MVSAFQVFNG ISPFVKFSHF 480 TANQAIQEAF EREERVHIID LDIMQGLQWP GLFHILASRP GGPPHVRLTG LGTSLEALEA 540 TGKRLSDFAD KLGIPFEFCP VADKVGNLEP ERLNVSKTEA VAVHWLQHSL YDVTGSDTNT 600 LWLLQRLAPK VVTVVEQDLS HGGSFLGRFV EAIHYYSALF DSLGASYGEE SEERHVVEQQ 660 LLSKEIRNVL ALGGPSRSSE EVKFHNWREK LQQSGFKPIS LAGNAATQAT LLLGMFPSDG 720 YTLVEDNGAL KLGWKDLCLL TASAWRPFHA TTTTILHR

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MLMAACDLVG ENGGINGRNS NDESQMRSTM RKRMASEVAD YHRFPRRTQF VSDNNMACSF  60
MAATGASNNP NPLFNYSTMN MDNVNTIVPS ANFAALTSAG PAFLSTTASN FSCVDAVGTN  120
SPQPPAVCGF SGLPLFPPTE RNRNTAVASA AVTATSVNTT VPVSLAPISN SMDDSSATAW  180
IDGVIRDLIH TSSNVSIPQL IHNVREIIYP CNPNLAALLE YRLRSLMDPL ERRRKEAPPP  240
PLHLPEVSLA RHHSQQQQQQ GSSGLTLNLD SAIDSLPNYS LTEPCAMNQY LSWGITPLPI  300
SSNNQVSSSP SATTPPVPSL NQHHRAQGQP LVQENTSPVE KTTASTATVG TTTTAPTSTV  360
ETVQACNGRD RKEELRQQKR DEEGLHLLTL LLQCAEAVSA NNFEDANRML LELSQLSTPF  420
GTSAQRVAAY FSEAISARLV SSCLGICGGL PSIPPSHTQK MVSAFQVFNG ISPFVKFSHF  480
TANQAIQEAF EREERVHIID LDIMQGLQWP GLFHILASRP GGPPHVRLTG LGTSLEALEA  540
TGKRLSDFAD KLGIPFEFCP VADKVGNLEP ERLNVSKTEA VAVHWLQHSL YDVTGSDTNT  600
LWLLQRLAPK VVTVVEQDLS HGGSFLGRFV EAIHYYSALF DSLGASYGEE SEERHVVEQQ  660
LLSKEIRNVL ALGGPSRSSE EVKFHNWREK LQQSGFKPIS LAGNAATQAT LLLGMFPSDG  720
YTLVEDNGAL KLGWKDLCLL TASAWRPFHA TTTTILHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	371	747	3	380	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2137	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017611270.1	0.0	PREDICTED: protein SCARECROW-like
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A0B0N7K5	0.0	A0A0B0N7K5_GOSAR; Protein SCARECROW-like protein
STRING	Gorai.006G236200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8164	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein