PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1966
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 191aa    MW: 21806.7 Da    PI: 10.0065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1966genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-054466123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H+++H
  Gh_A09G1966 44 YTCSFCKREFRSAQALGGHMNVH 66
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-64170No hitNo description
Gene3DG3DSA:3.30.160.609.9E-44269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.4E-74468IPR007087Zinc finger, C2H2
SMARTSM003550.00384466IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9284471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEKKSLRVDH SIIIGNNKLK GSSWREFGEE DYVCGGIPWP PRSYTCSFCK REFRSAQALG  60
GHMNVHRRET ARLLRQSSTP PGDYNGQPSF LKLNPNPNPN FRSSSSLIAR PFCSTLPHHL  120
SSSSSGFSNE MKKWRRKGAK SVFQVKEFKD YECNNNNLLK KKKINESVRL ELEVDVVSDS  180
KEDLDLELRL G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-143966229superman protein
2l1o_A3e-143966229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016715255.11e-139PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1U8LL591e-138A0A1U8LL59_GOSHI; transcriptional regulator SUPERMAN-like
TrEMBLA0A2P5WN391e-138A0A2P5WN39_GOSBA; Uncharacterized protein
STRINGGorai.006G247700.11e-105(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-20zinc-finger protein 10