PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G1389 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 200aa MW: 21717.4 Da PI: 8.2367 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.4 | 7.5e-36 | 38 | 190 | 7 | 112 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...seceaesssssasnsssg............. 88 +++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++++a +c +s ++s+++++ Gh_A09G1389 38 TSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTTPAaheISC--ASGLTTTSSPTEScqlhpvgigsgvv 133 689********************************************************77777433233..22222222222223344455555555 PP TCP 89 .................................kaaksaakskksqksaasalnlak 112 ++++++a ++++ a++ +++ k Gh_A09G1389 134 agmytvttpppscrldlcqpmgfqystvgrngyQHMPFTALLLQPTAAAEEEQQVGK 190 556556666666666666665555555555555555555544444444444455555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-30 | 38 | 167 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.853 | 39 | 93 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MAFHKFSATS NRTNSNLNSS LAGESTPKTQ LRKPIPLTSK DRHTKVNGRG RRVRMPALCA 60 ARIFQLTREL GHRSDGETIE WLLRQAEPSI IAATGSGTTP AAHEISCASG LTTTSSPTES 120 CQLHPVGIGS GVVAGMYTVT TPPPSCRLDL CQPMGFQYST VGRNGYQHMP FTALLLQPTA 180 AAEEEQQVGK EEEEEKRHQE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605243.1 | 1e-147 | PREDICTED: transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 1e-45 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A0D2QBD5 | 1e-127 | A0A0D2QBD5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G165300.1 | 1e-128 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15265 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 9e-47 | TCP family protein |