PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1356
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 282aa    MW: 30788.8 Da    PI: 8.3378
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1356genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00062189211123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ Cg  Fs+   L  H+r+H
  Gh_A09G1356 189 HECSLCGAEFSSGQALGGHMRRH 211
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-10114139IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182115142IPR007087Zinc finger, C2H2
SuperFamilySSF576676.74E-7115137No hitNo description
SMARTSM003550.45115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576676.74E-7184211No hitNo description
PfamPF139121.2E-12188212IPR007087Zinc finger, C2H2
PROSITE profilePS501579.785189211IPR007087Zinc finger, C2H2
SMARTSM003550.019189211IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MESQEEVVAC KDQLQIIKGK RSKRPRQLSP LSLAMGSSPS TTATTSSGAE SGRNSDDWRG  60
FGSPTTSVEL AESTEEDEDM ANCLILLARG QTGKLAPEPV SIATTSKTMT GTYVHQCKTC  120
NRCFPSFQAL GGHRASHKKP KVANIEENNK GLMFMKEDVQ QPFNNMNTTL SLQITNKPTL  180
CHISKPKVHE CSLCGAEFSS GQALGGHMRR HRTIPNAAAA AATTIVRPES DDKPKKPRTV  240
LQLDLNLPAP EDDHQRETKF SFASKQDKLV LFSASSLVDC HY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233239PKKPRTV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.235460.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690147.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1U8JIL90.0A0A1U8JIL9_GOSHI; zinc finger protein ZAT5-like
STRINGGorai.006G161200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.13e-55C2H2 family protein