PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1315
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 390aa    MW: 42807.9 Da    PI: 7.1677
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1315genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.14.6e-131152344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 ien+s r+ ++ kRr+g+ KK  EL +LC++e  ++i+s + 
  Gh_A09G1315 11 IENSSARKASLGKRRQGLVKKVTELTTLCGVEGGIVIYSRNE 52
                 9**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.848151IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-17160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-19294IPR002100Transcription factor, MADS-box
CDDcd002667.39E-25285No hitNo description
PRINTSPR004042.3E-6323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-131152IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTRKKVKLAW IENSSARKAS LGKRRQGLVK KVTELTTLCG VEGGIVIYSR NEEEPIVWLS  60
REEVERLLRK FNEVPEVERM KRSMNLETYY KEMISKSQDK LRKQNRKNKE MKVGQLMLQV  120
EQGKMPDDFN VNELHDMIWY GETMRADIRK LMEFYEQFPS SSVGLTQGDA PLPPPPPQGR  180
APAVGQTIGI ANAGVGDKDT SEYFPREDRL NSNTNTNYIR GEASSSIRRE MGLTYHNLFA  240
AATGDHLKLP GSSLGGVGNS SLQQPRPSHG GSSRTAPEPG LTGFSYGGSS SAAIEPRSSM  300
PPFGYDSSSS VRTANPELPP FEPLRDDLLK GDNIGPFDND MGPGHYPLGP LESSSPASDF  360
GGNPSRFFGG ESSSHGAAGS RETGPFDDKN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147610.0JX614761.1 Gossypium hirsutum clone NBRI_GE58390 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016676190.10.0PREDICTED: uncharacterized protein LOC107895417
TrEMBLA0A1U8IDB70.0A0A1U8IDB7_GOSHI; uncharacterized protein LOC107895417
STRINGGorai.006G153500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16953311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.15e-30AGAMOUS-like 48