PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A09G1315

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 390aa MW: 42807.9 Da PI: 7.1677

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G1315	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.1	4.6e-13	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 ien+s r+ ++ kRr+g+ KK EL +LC++e ++i+s + Gh_A09G1315 11 IENSSARKASLGKRRQGLVKKVTELTTLCGVEGGIVIYSRNE 52 9**************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.848	1	51	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.8E-17	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-19	2	94	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.39E-25	2	85	No hit	No description
PRINTS	PR00404	2.3E-6	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-13	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-6	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MTRKKVKLAW IENSSARKAS LGKRRQGLVK KVTELTTLCG VEGGIVIYSR NEEEPIVWLS 60 REEVERLLRK FNEVPEVERM KRSMNLETYY KEMISKSQDK LRKQNRKNKE MKVGQLMLQV 120 EQGKMPDDFN VNELHDMIWY GETMRADIRK LMEFYEQFPS SSVGLTQGDA PLPPPPPQGR 180 APAVGQTIGI ANAGVGDKDT SEYFPREDRL NSNTNTNYIR GEASSSIRRE MGLTYHNLFA 240 AATGDHLKLP GSSLGGVGNS SLQQPRPSHG GSSRTAPEPG LTGFSYGGSS SAAIEPRSSM 300 PPFGYDSSSS VRTANPELPP FEPLRDDLLK GDNIGPFDND MGPGHYPLGP LESSSPASDF 360 GGNPSRFFGG ESSSHGAAGS RETGPFDDKN

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MTRKKVKLAW IENSSARKAS LGKRRQGLVK KVTELTTLCG VEGGIVIYSR NEEEPIVWLS  60
REEVERLLRK FNEVPEVERM KRSMNLETYY KEMISKSQDK LRKQNRKNKE MKVGQLMLQV  120
EQGKMPDDFN VNELHDMIWY GETMRADIRK LMEFYEQFPS SSVGLTQGDA PLPPPPPQGR  180
APAVGQTIGI ANAGVGDKDT SEYFPREDRL NSNTNTNYIR GEASSSIRRE MGLTYHNLFA  240
AATGDHLKLP GSSLGGVGNS SLQQPRPSHG GSSRTAPEPG LTGFSYGGSS SAAIEPRSSM  300
PPFGYDSSSS VRTANPELPP FEPLRDDLLK GDNIGPFDND MGPGHYPLGP LESSSPASDF  360
GGNPSRFFGG ESSSHGAAGS RETGPFDDKN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614761	0.0	JX614761.1 Gossypium hirsutum clone NBRI_GE58390 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016676190.1	0.0	PREDICTED: uncharacterized protein LOC107895417
TrEMBL	A0A1U8IDB7	0.0	A0A1U8IDB7_GOSHI; uncharacterized protein LOC107895417
STRING	Gorai.006G153500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16953	3	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40210.1	5e-30	AGAMOUS-like 48