PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1153
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 295aa    MW: 32363.9 Da    PI: 8.3326
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1153genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05267289223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp+C+k F+++  L+ H  + H
  Gh_A09G1153 267 VCPKCSKGFRDPVALVEHVERdH 289
                  7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.52E-12650No hitNo description
PROSITE profilePS510397.6931056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.1E-101153IPR000058Zinc finger, AN1-type
SMARTSM001540.00311352IPR000058Zinc finger, AN1-type
PfamPF014283.4E-131351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.107.3E-1191145IPR000058Zinc finger, AN1-type
SuperFamilySSF1183106.28E-993142No hitNo description
PROSITE profilePS510397.91398145IPR000058Zinc finger, AN1-type
SMARTSM001540.034101142IPR000058Zinc finger, AN1-type
PfamPF014281.7E-8101141IPR000058Zinc finger, AN1-type
SMARTSM003550.067229252IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785229257IPR007087Zinc finger, C2H2
PfamPF138949.0E-4230252No hitNo description
PROSITE patternPS000280231252IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-4233252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.85266294IPR007087Zinc finger, C2H2
SMARTSM003555.4266289IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280268289IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGTPQFPDLG KHCSVEDCKQ IDFLPFTCDR CHLVYCLEHR SYIKHHCPKA DKKDVTVVIC  60
PLCAKGVRLV PDEDPNITWE MHVNIECDPS NYDKVTKKKK CPVPGCREVL TFSNTIKCRD  120
CTLDHCLKHR FGPDHKCPGP KKSDPGFPFM GLLSRSRKES KTNQAPATSS SKWATSFLNA  180
ASTVRASAEA GMTKLGSEIS QKLQIARDGV GLSSSSGSGS SNGNAGQVEE CPQCGAKFAS  240
VTTLVDHVEK VHERNNQSRV FKMSIDVCPK CSKGFRDPVA LVEHVERDHG GTSKA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.43740.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016669295.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
SwissprotQ8VZ421e-135SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A1U8HTD90.0A0A1U8HTD9_GOSHI; zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
STRINGGorai.006G137400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-135C2H2 family protein