PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0878
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 266aa    MW: 28203.7 Da    PI: 4.9468
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0878genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05240263123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ C+ksF +   L++H +  H
  Gh_A09G0878 240 FSCGSCSKSFGSEGGLESHKKAkH 263
                  89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.801240266IPR007087Zinc finger, C2H2
PROSITE patternPS000280242263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEFWGIEVKA GQPIKTDPGA SHVIHLSQAT LGESKNKAES VPLYVNVNGK KLVLGTLSHQ  60
NCPQLCFDLV FEQGFELSHN WKNGSVYFLD SEEESSEDEE LPVAAENGKA KTDAKTAKAN  120
AGKPDAVKQA VKITEPSDNK KNEDDDDDSD SEDGSGSDDE DEEMSVDESS DDEDEETPKK  180
VESSKKRPAE AATPVSAKKA KPAATPQKTD GKKGGHTATP HPSKQAGKTS GKSPKSGGQF  240
SCGSCSKSFG SEGGLESHKK AKHGGK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.200310.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during fertilization, while it is repressed during seed development. {ECO:0000269|PubMed:15082924}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in ovaries. Accumulates predominantly in the micropylar region of the ovule's integument. {ECO:0000269|PubMed:15082924}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485064.11e-158PREDICTED: histone deacetylase HDT1-like isoform X2
SwissprotQ6V9I66e-64HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A1U8I1651e-154A0A1U8I165_GOSHI; histone deacetylase HDT1-like
STRINGGorai.006G109300.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.25e-32histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]