PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0861
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 693aa    MW: 74988 Da    PI: 9.5373
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0861genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19553602255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++ a+++l+g
  Gh_A09G0861 553 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDTAARRLRG 602
                  69*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.1150.107.0E-2849104IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
CDDcd006101.36E-13854421IPR005814Aminotransferase class-III
HamapMF_0110740.00758448IPR004636Acetylornithine/Succinylornithine transaminase family
TIGRFAMsTIGR007072.8E-13261419IPR004636Acetylornithine/Succinylornithine transaminase family
SuperFamilySSF533831.51E-11263416IPR015424Pyridoxal phosphate-dependent transferase
PfamPF002021.0E-10369421IPR005814Aminotransferase class-III
Gene3DG3DSA:3.40.640.101.5E-85105350IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
PROSITE patternPS006000271308IPR005814Aminotransferase class-III
Gene3DG3DSA:3.90.1150.107.0E-28355421IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
CDDcd000181.17E-29552611No hitNo description
PfamPF008474.5E-13553602IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21553610IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-29553610IPR001471AP2/ERF domain
SMARTSM003801.2E-32553616IPR001471AP2/ERF domain
PROSITE profilePS5103222.853553610IPR001471AP2/ERF domain
PRINTSPR003675.4E-10554565IPR001471AP2/ERF domain
PRINTSPR003675.4E-10576592IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006526Biological Processarginine biosynthetic process
GO:0042742Biological Processdefense response to bacterium
GO:0044419Biological Processinterspecies interaction between organisms
GO:0080022Biological Processprimary root development
GO:0009570Cellular Componentchloroplast stroma
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003992Molecular FunctionN2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
GO:0005507Molecular Functioncopper ion binding
GO:0030170Molecular Functionpyridoxal phosphate binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MGSLQLFHSF SHSVSPATNL HRPLNKGRVN ASLNMDVEAP NPLKLKSNGS NEVIEEEAKF  60
IVGSYARSPV VLSSGKGCKL YDPEGREFLD CAAGIAVNAL GHGDPDWVRA VTEQANILTH  120
VSNAYYTIPQ VELAKRLVSN SFADRVFFTN SGTEANEAAI KFSRKFQRFI HPDNKQPATA  180
FISFTNSFHG RTMGALALTS KEHYRSPFEP VMPGVTFLEY GNIHAAIDLI RNGMIAAVFV  240
EPVQGEGGIY SATKEFLQAL RSACDDAGSL LVFDEVQCGL GRTGYLWAHE AYGVFPDMMT  300
LAKPLAGGLP IGATLVTERV ASAIAHGDHG STFAGSPLVC SAAISVFNKI ANPSFLSSVS  360
KKGDYMKELL NQKLGGNPHV KEIRGWGLMI GIELDVSASP LVDACRNSGL IVLTAGKGNV  420
ILPYAKSERG GERLKVRNGI ELITSFLIHF HLIHNPVPLL FYRRSYPPIY TEFSDSGNGI  480
GTYLETQPVI DGIAAVVGQH VLFGTKTNPT TSNSQGDGDR ASTEETSSFV SASHRFGSNK  540
RNVNAAAASM QKSYRGVRKR PWGRWSAEIR DRIGRCRHWL GTFDTAEEAA RAYDTAARRL  600
RGSKAKTNFE IPSALPLPSR CSTSSSSTEA KKKVKRKGNK TQRKCAVVTS VAHLFSSGGN  660
EGKGSEELEL KLGMGLNNKP SMPSNDVGSV NHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2e54_A1e-102604372376Acetylornithine aminotransferase
2ord_A1e-1026043714388Acetylornithine aminotransferase
2ord_B1e-1026043714388Acetylornithine aminotransferase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.42610.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found at highest levels in nodules, confined to the infected cells.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the biosynthesis of citrulline.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668833.10.0PREDICTED: acetylornithine aminotransferase, mitochondrial-like
SwissprotO048660.0ARGD_ALNGL; Acetylornithine aminotransferase, mitochondrial
TrEMBLA0A1U8HY070.0A0A1U8HY07_GOSHI; acetylornithine aminotransferase, mitochondrial-like
STRINGGorai.006G107600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-22ERF family protein
Publications ? help Back to Top
  1. Guan C, et al.
    Nitrogen metabolism in actinorhizal nodules of Alnus glutinosa: expression of glutamine synthetase and acetylornithine transaminase.
    Plant Mol. Biol., 1996. 32(6): p. 1177-84
    [PMID:9002618]