PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G0743

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 401aa MW: 43012.6 Da PI: 7.2891

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G0743	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	18	39	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k+Fs++ L H+r H Gh_A09G0743 18 TCFYCNKVFSSHRALGGHLRIH 39 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.91	17	44	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.84E-5	18	43	No hit	No description
PROSITE pattern	PS00028	0	19	39	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MNFLLPRDDS EEHLGTKTCF YCNKVFSSHR ALGGHLRIHQ DGRILRAPNY PGRSRSSVNN 60 TGNPPASLPN SELNSFASFN SLSAISSNSV NNSGNPPASL PNSQLNSSSS FNSPTQFSIS 120 SVNNSGNSPA SLPNNQLNST AFNSLTLLPA AHLACDFSWM IYLNETNQVS RSQFIGGYSG 180 VPLIPVILSP DFSYGYSYGA TYHHNSLAPR AFAPVGSNVD FPYVCSSCAA YYHNILALRA 240 FVPVGMIAAM PSAAFALCGS VVAPGFLVDS SLFLGSNGVR QFNTNEFQIS QVTLSPSFGN 300 ALPNVQAQNA GPPSAVSANV GRSERRSLGK RSREADRSRN AETSNASRRP RIAPNEHVEQ 360 ENRPKKELQL FVDVVVPSSS SEASSSAEEE DPVDMDLSLH L

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MNFLLPRDDS EEHLGTKTCF YCNKVFSSHR ALGGHLRIHQ DGRILRAPNY PGRSRSSVNN  60
TGNPPASLPN SELNSFASFN SLSAISSNSV NNSGNPPASL PNSQLNSSSS FNSPTQFSIS  120
SVNNSGNSPA SLPNNQLNST AFNSLTLLPA AHLACDFSWM IYLNETNQVS RSQFIGGYSG  180
VPLIPVILSP DFSYGYSYGA TYHHNSLAPR AFAPVGSNVD FPYVCSSCAA YYHNILALRA  240
FVPVGMIAAM PSAAFALCGS VVAPGFLVDS SLFLGSNGVR QFNTNEFQIS QVTLSPSFGN  300
ALPNVQAQNA GPPSAVSANV GRSERRSLGK RSREADRSRN AETSNASRRP RIAPNEHVEQ  360
ENRPKKELQL FVDVVVPSSS SEASSSAEEE DPVDMDLSLH L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017608664.1	1e-112	PREDICTED: uncharacterized protein LOC108454644
TrEMBL	A0A2P5XM72	0.0	A0A2P5XM72_GOSBA; Uncharacterized protein
STRING	Gorai.006G092500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24781	3	4