PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0391
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 785aa    MW: 86848.3 Da    PI: 7.1356
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0391genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-19103156356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k ++++++q++eLe++F+++++p +++r+eL+++lgL+ +q+k+WFqNrR+++k
  Gh_A09G0391 103 KFHRHNPHQIHELESFFKECPHPEEKQRRELSRRLGLESKQIKFWFQNRRTQMK 156
                  556899*********************************************999 PP
2START167.21.1e-523065252203
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                  +a++a++el+k+a+ + p+W k      e +n +e+ ++f++  +     +++ea r++++v+     lv +l+d + +W e+++    +a t++v+s
  Gh_A09G0391 306 VALAAMDELIKMAQMGNPLWIKGFgdgmETLNLEEYKRTFSSFIGmkpsgFTTEATRETAMVPLRGLALVDTLMDAN-CWAEMFPcmisRAVTIDVLS 402
                  7899*******************9999999999999999977555999*****************************.******************** PP

                  TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
        START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                  sg      +alqlm ae+q+lsplvp R + f+R+++q+++ +w+ivdvS++  +  +    ++ +++lpSg++i++++n +skvtwveh +++++++
  Gh_A09G0391 403 SGkgvtrhNALQLMEAEFQVLSPLVPiRQVQFIRFCKQHSDSVWAIVDVSINLSNAAN-ALMFANCRRLPSGCVIQDMDNKYSKVTWVEHSEYDESTV 499
                  ********************************************************99.9************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHTXXX CS
        START 178 hwllrslvksglaegaktwvatlqrq 203
                  h llr+l++sg  +gak+w atl+rq
  Gh_A09G0391 500 HHLLRPLLGSGFGFGAKRWIATLRRQ 525
                  ***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1987152IPR009057Homeodomain-like
SuperFamilySSF466897.1E-2087158IPR009057Homeodomain-like
PROSITE profilePS5007117.62198158IPR001356Homeobox domain
SMARTSM003892.1E-1699162IPR001356Homeobox domain
PfamPF000466.1E-17103156IPR001356Homeobox domain
CDDcd000862.07E-17105158No hitNo description
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PROSITE profilePS5084837.125296531IPR002913START domain
SuperFamilySSF559612.47E-29297526No hitNo description
CDDcd088753.92E-108300525No hitNo description
SMARTSM002341.0E-32305528IPR002913START domain
PfamPF018521.7E-44306525IPR002913START domain
SuperFamilySSF559613.3E-15568779No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
ICSNLFPQIK NPSALHLHLL KGWVNQFANA GDATIEIAEN TALRKRMASH GELRLIGENY  60
DPGFIGMMKE DDGYGSSDDF EGALGNDQDT ADNGRPPRKK KKKFHRHNPH QIHELESFFK  120
ECPHPEEKQR RELSRRLGLE SKQIKFWFQN RRTQMKTQLE RHENVILKQE NDKLRAENDL  180
LRQAIASAIC NNCGVPAVPD EISYEPSQLM IENSRLKDEL NRARALTNKF LGRHLSSSSA  240
NPSPSPSQGL NSNVEVVVRR TGFCGLNNGS ISLPMGFEFG HGATMPLMNP SFAYEMPYDK  300
SALVDVALAA MDELIKMAQM GNPLWIKGFG DGMETLNLEE YKRTFSSFIG MKPSGFTTEA  360
TRETAMVPLR GLALVDTLMD ANCWAEMFPC MISRAVTIDV LSSGKGVTRH NALQLMEAEF  420
QVLSPLVPIR QVQFIRFCKQ HSDSVWAIVD VSINLSNAAN ALMFANCRRL PSGCVIQDMD  480
NKYSKVTWVE HSEYDESTVH HLLRPLLGSG FGFGAKRWIA TLRRQYSSLA LLMSPDIHGE  540
DINTVGKKSM LKLAQRMAYN FSAGIGASSV NKWDKLNVGN VGEDVRVMTR KNVNDPGEPL  600
GIVLSAATSV WMPITQQTLF NLLRNERMRN QWDILSSGRP MQAMYSVAKG PGQGNCVSIL  660
RGAAVNGSDT NMLILQETWS VDCGALIVYA PVDASSIRVV MNGGDSSHVA LLPSGFAILP  720
GVQTDGPSMQ PDIDENTSDG CILTVGFQIL VNSVPTAKLT VESVETVNHL LTCTVEKIKA  780
ALWVT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.5790.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO333553910.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3384950.0AY338495.1 Gossypium hirsutum homeodomain protein BNLGHi6313 (bnlghi6313) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728128.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1U8MRE50.0A0A1U8MRE5_GOSHI; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
STRINGGorai.006G047300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]