PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G2453

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 765aa MW: 84105.1 Da PI: 6.2139

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G2453	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.2e-21	80	135	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t+ q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k Gh_A08G2453 80 KKKYHRHTPRQIQELESFFKECPHPDEKQRMELSRRLGLEGKQIKFWFQNRRTQMK 135 79999************************************************999 PP
2	START	158.9	4e-50	281	495	2	205
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 +a++a++el+k+a+ + p+W k es+n +e++++f++ + + +ea +a+g+v lve l+d + +W e+++ +a+t++v+s Gh_A08G2453 281 VALSAMDELIKMAQMDNPLWIKGMgggmESLNVEEYRRNFSSCIGmkpssYATEATKATGLVYLRGLALVEALMDAN-RWVEMFPcmisRAATIDVLS 377 7899**********************************98888****************************.**************** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 sg ++lq+m ae+q+lsplvp R + f+R+++q+++g+w++vdvS+d+ ++ +++lpSg++i++++ sk+twveh +++++ + Gh_A08G2453 378 SGtgvtrdNELQVMDAEFQVLSPLVPvRQVRFIRFCKQHSEGVWAVVDVSIDPSIPN--------CRRLPSGCVIQDVDTKCSKITWVEHSEYDDSAV 467 ************************************************98885........789************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqce 205 h ll++l++sg +ga +w+atlqrqc Gh_A08G2453 468 HHLLQPLLSSGFGFGAHRWLATLQRQCD 495 ************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-22	67	137	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.3E-20	68	137	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.54	77	137	IPR001356	Homeobox domain
SMART	SM00389	1.3E-18	79	141	IPR001356	Homeobox domain
CDD	cd00086	1.85E-19	80	137	No hit	No description
Pfam	PF00046	8.0E-19	80	135	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	112	135	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	34.16	271	499	IPR002913	START domain
SuperFamily	SSF55961	3.3E-30	273	495	No hit	No description
CDD	cd08875	5.54E-103	275	494	No hit	No description
SMART	SM00234	6.6E-34	280	496	IPR002913	START domain
Pfam	PF01852	2.0E-42	281	495	IPR002913	START domain
SuperFamily	SSF55961	3.98E-19	525	759	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence Send to blast
CFHGVFSGIS LAETLDLGKD IKEKKRMDGH GEMGLIGENF DPGFVGRMKE DGYEIRSESD 60 NFDVASGDDQ DAAADGPSKK KKYHRHTPRQ IQELESFFKE CPHPDEKQRM ELSRRLGLEG 120 KQIKFWFQNR RTQMKTQLER HENVILRQEN DKLRAENDLL KQAMTAPICS SCGGPAVPGE 180 ISYEQHQLRI ENARLKDELT RICALTNKFL GRPLSSSGSP IPPHGLNSNL ELAVGRNGFG 240 GLNNAGTSLP MGFEFGDGSM MSIVKPMVNE MQYDRSAFVD VALSAMDELI KMAQMDNPLW 300 IKGMGGGMES LNVEEYRRNF SSCIGMKPSS YATEATKATG LVYLRGLALV EALMDANRWV 360 EMFPCMISRA ATIDVLSSGT GVTRDNELQV MDAEFQVLSP LVPVRQVRFI RFCKQHSEGV 420 WAVVDVSIDP SIPNCRRLPS GCVIQDVDTK CSKITWVEHS EYDDSAVHHL LQPLLSSGFG 480 FGAHRWLATL QRQCDCMAIL MSQDIPGENN TGITPAGRKS MIKLAQRMTY NFCAGVCASS 540 VHKWDKLSVG NVGEDVRVMT RKNINDPGEP HGVVLSAATS VWMPVTQERL FDFLRDERMR 600 SEWDILSHGG PMQEMVHVAK GMGHGNCVSL LRGSAINANE NNMLILQETW SDASGALVVY 660 APVDISSMSV VMNGGDSTYV ALLPSGFAIL PGISPSYHGG RSESNGALVK PEIDGSIVSG 720 CLLTVGFQIL VNNVPTAKLT VESVETVNNL ISCTIQKIKA ALTVT

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence Send to blast

CFHGVFSGIS LAETLDLGKD IKEKKRMDGH GEMGLIGENF DPGFVGRMKE DGYEIRSESD  60
NFDVASGDDQ DAAADGPSKK KKYHRHTPRQ IQELESFFKE CPHPDEKQRM ELSRRLGLEG  120
KQIKFWFQNR RTQMKTQLER HENVILRQEN DKLRAENDLL KQAMTAPICS SCGGPAVPGE  180
ISYEQHQLRI ENARLKDELT RICALTNKFL GRPLSSSGSP IPPHGLNSNL ELAVGRNGFG  240
GLNNAGTSLP MGFEFGDGSM MSIVKPMVNE MQYDRSAFVD VALSAMDELI KMAQMDNPLW  300
IKGMGGGMES LNVEEYRRNF SSCIGMKPSS YATEATKATG LVYLRGLALV EALMDANRWV  360
EMFPCMISRA ATIDVLSSGT GVTRDNELQV MDAEFQVLSP LVPVRQVRFI RFCKQHSEGV  420
WAVVDVSIDP SIPNCRRLPS GCVIQDVDTK CSKITWVEHS EYDDSAVHHL LQPLLSSGFG  480
FGAHRWLATL QRQCDCMAIL MSQDIPGENN TGITPAGRKS MIKLAQRMTY NFCAGVCASS  540
VHKWDKLSVG NVGEDVRVMT RKNINDPGEP HGVVLSAATS VWMPVTQERL FDFLRDERMR  600
SEWDILSHGG PMQEMVHVAK GMGHGNCVSL LRGSAINANE NNMLILQETW SDASGALVVY  660
APVDISSMSV VMNGGDSTYV ALLPSGFAIL PGISPSYHGG RSESNGALVK PEIDGSIVSG  720
CLLTVGFQIL VNNVPTAKLT VESVETVNNL ISCTIQKIKA ALTVT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21591	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016736306.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A1U8NB98	0.0	A0A1U8NB98_GOSHI; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
STRING	Gorai.004G120700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1128	27	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]