PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G2422
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 298aa    MW: 33227.4 Da    PI: 9.1131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G2422genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18114164256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  +y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Gh_A08G2422 114 QYRGVRQRH-WGKWVAEIRLPQN---RMRIWLGTYETAEAAAYAYDRAAYKLRGE 164
                  7*******9.**********954...59*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-15113172No hitNo description
SuperFamilySSF541715.3E-22114171IPR016177DNA-binding domain
PROSITE profilePS5103222.906114171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-30114172IPR001471AP2/ERF domain
PfamPF008472.6E-12114164IPR001471AP2/ERF domain
SMARTSM003803.3E-35114177IPR001471AP2/ERF domain
PRINTSPR003675.2E-10115126IPR001471AP2/ERF domain
PRINTSPR003675.2E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MQEINHPLGF NNIVNIGSSL SQLILSGGSN TLDSIFSHCA PSTTTTSTAI TTNCIYEPIG  60
SSVYLRQREL LQKFSQENNG NASFSGNSLM NRIPTYPNPA STSNFYLSPE KKKQYRGVRQ  120
RHWGKWVAEI RLPQNRMRIW LGTYETAEAA AYAYDRAAYK LRGEYARLNF QNIKDPSKLG  180
FGDGARLSAL KNSVDAKIQA ICQKVKRERA KKKAKKDRPA EADKTVKVTE SCSSSSSLSP  240
VAFSDSVSDG GFWRCENSPS SVSNDYPMMM AEEPQFEDCL LARMPSFDAE LIWDILAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-20113170159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-20111170262ATERF1
3gcc_A8e-20111170262ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.256290.0ovule
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016674239.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
RefseqXP_017624573.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W25e-67ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1U8IEK10.0A0A1U8IEK1_GOSHI; ethylene-responsive transcription factor ERF061-like
STRINGGorai.004G133800.11e-176(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-44ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]