PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G2184 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HRT-like | ||||||||
Protein Properties | Length: 449aa MW: 50314.5 Da PI: 9.2351 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 58.2 | 1.4e-18 | 248 | 276 | 2 | 30 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CGv l+dGs+Ckr+Pv+gRKRC+eHKG++ Gh_A08G2184 248 CGVVLDDGSICKRPPVEGRKRCAEHKGKK 276 ***************************98 PP | |||||||
2 | HRT-like | 57.2 | 2.8e-18 | 304 | 334 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+++dGs C+rqPv gRKRC HKG+Ri Gh_A08G2184 304 ICGVAMDDGSLCRRQPVSGRKRCDLHKGRRI 334 8*****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50164 | 10.405 | 68 | 162 | IPR000305 | GIY-YIG nuclease superfamily |
SMART | SM00465 | 0.0022 | 69 | 166 | IPR000305 | GIY-YIG nuclease superfamily |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MVLIVEEEEI PIELLAVHVD RLKREDHKKT DHDSDFSKWK LLICPHDWEN GKGGAVTRYR 60 SENLPKSSGP GTYELAVSRD RHGKLEPDLV VYVGAAENIR ARLQQYGRDG THLCRKDKGC 120 PLFDIFARGC SIVYRWVPRE NKADALRTEA QLLGTYDYPW NKGSNGIRRH DDILQKLDKH 180 ASNPKKLNQK QVGIKIKASK LASDDSEFGK YKNGENLNFL PQVFNFSRSR PRLVSNHGGS 240 DKNETFSCGV VLDDGSICKR PPVEGRKRCA EHKGKKTTGA STSSSMKSQP HKEDYPEIEH 300 CSPICGVAMD DGSLCRRQPV SGRKRCDLHK GRRIYSSGSE ITSYETMPYA IFNPYSDEKD 360 SNSSLNSNNC STPICGVLTC NGTPYKRTVN GNGRCWQHLK YSGSHSSSNY FIPRISNYDS 420 TGTSICGAPT RNGSFCRRTV KGNGTCRQH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.25280 | 4e-96 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016729123.1 | 0.0 | PREDICTED: uncharacterized protein LOC107940200 | ||||
TrEMBL | A0A1U8MU96 | 0.0 | A0A1U8MU96_GOSHI; uncharacterized protein LOC107940200 | ||||
STRING | EOY30505 | 1e-155 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2954 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 1e-80 | effector of transcription2 |