PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G1799 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 475aa MW: 53773.1 Da PI: 4.447 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 165.1 | 5.8e-51 | 118 | 475 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lL +c +a+ s+++elaq+++ rl+e asp+g++++Rla+y+t L ++ + ++e+ s++ a+++++++++P+ +f+h+taN Gh_A08G1799 118 LHLLKACGDAMGSKQMELAQEIIRRLNEKASPTGKSIERLAFYLTLSLDKQANY---------LMQEA----SKNYDAVFNALYQIFPYGRFAHFTAN 202 699***********************************************9998.........22222....2344456778**************** PP GRAS 100 qaIleavegeerv.HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 +aIle++ +v Hi+Dfdi++G+QWpaL+++L +g +lR+T+++ +e++ +++ eet+++L k A+++g+++e + + ++e l ++ Gh_A08G1799 203 SAILESIPAYATVlHIVDFDIGKGIQWPALIETLGR--QGLRTLRLTTIKWEEEDgscnATTSFEETKKQLCKHAKTVGLRMEVEEM---DIEGL-MS 294 *******9996666********************98..6999********999989999999*********************9986...44444.33 PP GRAS 193 eLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqe.adh..nsesFlerflealeyysalfdsleaklpresee 281 +vk +E la n+++ l ++ ++ + ++ +e+L + k l s ++++ + ++ + +sF f l y+ al++s+e+ + e+ Gh_A08G1799 295 --KVKMdNEWLAFNCMVGLPHME--KQRSVKHVEEFLTTAKALlrsdtSKGIITLGDGIgIKKwtDYTSFDSFFEAQLVYFQALLESMEQF--QFLEA 386 ..344359**************6..444444589***9999875444245578887754333342556777777788***********999..556** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374 ri +E ++ ++++++v +++ + et + r l++ G++p ++s +++ +a+ l+r+ + s + e e+++++vlg ++ pLv vS+W+ Gh_A08G1799 387 RIAMECLFVVPHLCSLVNAQQWK-----ETCS-TRCSLTKLGLEPRRMSWENYLEAEELVRQAEdSCWLKTEgENNNEMVLGYMGAPLVRVSSWT 475 *******************9998.....4333.3899***************************43335555788*******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 23.971 | 91 | 453 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-48 | 118 | 475 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MDALVNSFKF STSSVSIEDF SDISSSTPYV DEAYSSHFLS THLPGILQWV NEGDTPNDQF 60 SLDGVENYCS EQMFMEDVSC QNLSPTSGEV SMDVIQLVQA YLVLPDESME IDNQTSILHL 120 LKACGDAMGS KQMELAQEII RRLNEKASPT GKSIERLAFY LTLSLDKQAN YLMQEASKNY 180 DAVFNALYQI FPYGRFAHFT ANSAILESIP AYATVLHIVD FDIGKGIQWP ALIETLGRQG 240 LRTLRLTTIK WEEEDGSCNA TTSFEETKKQ LCKHAKTVGL RMEVEEMDIE GLMSKVKMDN 300 EWLAFNCMVG LPHMEKQRSV KHVEEFLTTA KALLRSDTSK GIITLGDGIG IKKWTDYTSF 360 DSFFEAQLVY FQALLESMEQ FQFLEARIAM ECLFVVPHLC SLVNAQQWKE TCSTRCSLTK 420 LGLEPRRMSW ENYLEAEELV RQAEDSCWLK TEGENNNEMV LGYMGAPLVR VSSWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-15 | 117 | 379 | 4 | 270 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016749204.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A1U8PG64 | 0.0 | A0A1U8PG64_GOSHI; nodulation-signaling pathway 2 protein-like | ||||
STRING | Gorai.004G233600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19272 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 2e-20 | GRAS family protein |