PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1619
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 311aa    MW: 34428.2 Da    PI: 4.703
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1619genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75e-35281192102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+e+g++f+ + + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++i+
   Gh_A08G1619  28 FLTKTYQLVDDPSVNDMISWNEDGSTFIAWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKGLLRDIQ 115
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Gh_A08G1619 116 RRKV 119
                   **86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-5624117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3425117IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-3625117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3028117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1707.9E-4171196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MASLPADQPS ESTASGAADS QRSLPTPFLT KTYQLVDDPS VNDMISWNED GSTFIAWRPA  60
EFARDLLPKY FKHNNFSSFV RQLNTYGFRK VVPDRWEFAN DCFRRGEKGL LRDIQRRKVT  120
PTTTAPAATV TVAAIPCKVS PSNSGDEQVI SSNSPPLATV LHRTTSSTTP ELLEENERLR  180
KENMQLNHEL TQLKGLCNNI LTLMTNYASG QSENNSNSAE GKALDLLPAK NSGTKAEGMG  240
PKEAVDMEED VTPKLFGVSI GLKRVRREDS VEEQNNNQEQ QQEMECEAGV KAEPLDGKSD  300
DQDSSWLELG K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-252812320125Heat shock factor protein 1
5d5u_B1e-252812029131Heat shock factor protein 1
5d5v_B1e-252812029131Heat shock factor protein 1
5d5v_D1e-252812029131Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.30480.0ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024510.0KJ702451.1 Gossypium hirsutum heat shock transcription factor (HSF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713397.10.0PREDICTED: heat stress transcription factor B-2b-like
RefseqXP_016713398.10.0PREDICTED: heat stress transcription factor B-2b-like
RefseqXP_016713399.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-104HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1U8LJP10.0A0A1U8LJP1_GOSHI; heat stress transcription factor B-2b-like
STRINGGorai.004G208800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-87HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]