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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G1584 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRF | ||||||||
Protein Properties | Length: 257aa MW: 27786.2 Da PI: 8.7879 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 26 | 1.6e-08 | 136 | 151 | 1 | 16 |
WRC 1 daepgrCrRtDGKkWR 16 d+epgrCrRtDGKkWR Gh_A08G1584 136 DPEPGRCRRTDGKKWR 151 79*************9 PP | |||||||
2 | WRC | 41.6 | 2.2e-13 | 161 | 190 | 16 | 45 |
WRC 16 RCsrrvlegkklCErHlhrgrsrsrkskee 45 RCs+++++++k+CErH+hrgr+rs+k +e+ Gh_A08G1584 161 RCSKEAVPDHKYCERHMHRGRQRSTKLVEA 190 9**************************997 PP | |||||||
3 | QLQ | 46.3 | 1.3e-16 | 67 | 101 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l+yKy+ a++PvP++Ll++i+k Gh_A08G1584 67 FTIFQLQELQLQSLIYKYMEAGLPVPHHLLLPIWK 101 7778*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.9E-6 | 65 | 101 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.355 | 66 | 101 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.0E-11 | 67 | 100 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 20.445 | 136 | 190 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.8E-10 | 161 | 189 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MEPQDSSPLK TGHFSDLGIG LTNLGDSGNM ESNRLSGGEG SPPIGLGLEL GCGSGHTQTG 60 ITKSCGFTIF QLQELQLQSL IYKYMEAGLP VPHHLLLPIW KSVAGSLGGL HGSPYQLYYG 120 FLGCGPLQLG YKNGVDPEPG RCRRTDGKKW RSISFYFHST RCSKEAVPDH KYCERHMHRG 180 RQRSTKLVEA SQVTRTSISR NNANTNLSIS LQVDSSNNSG NGSNLSSSFT GFSPNIALLR 240 GGDSKAVPLS PQFQELL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017625396.1 | 1e-157 | PREDICTED: growth-regulating factor 10-like | ||||
TrEMBL | A0A0B0NRG6 | 1e-156 | A0A0B0NRG6_GOSAR; Transmembrane 7 superfamily member 3 | ||||
STRING | Gorai.004G204600.1 | 1e-149 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16724 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 7e-32 | growth-regulating factor 5 |