PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1548
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 724aa    MW: 79581 Da    PI: 5.9841
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1548genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.81.7e-923647233374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  elL ++Ae v +g+++ a+ +Larl+++ sp g+p+qR+a+y+ +AL+  +++   + ++  pp++ ++ +++ +l a+k+fsevsP+++f ++t Nq
  Gh_A08G1548 364 ELLHKAAELVGTGNFAHARGILARLNHQLSPVGKPFQRAAFYIRKALQLLITN---NSVSPPPPKSPTRFDVIFKLLAYKVFSEVSPFIQFVNFTSNQ 458
                  7999************************************************9...445566777777788*************************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrv 196
                  a+lea++ +er+Hi Dfdi+ G+QW++++q+L  R +g   lRiT+++sp +++  el  ++e L  fA+e+g++fe  vl  ++l++   +l  +r+
  Gh_A08G1548 459 ALLEALDDAERIHIMDFDIGCGAQWASFMQELPMRIRGVRALRITAFASPLTHHPIELGLMRESLMLFANEIGLSFELVVLNFDSLDQApySLPLFRT 556
                  ********************************************************************************988888887445666799 PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  +++Ea+aVn+ ++  +   ++ +l++    +L++vk+lsPk+vv  +   d+n+ +F e ++ a++ y  +f+sl+a+   +s+  +k+Er+l+ ++i
  Gh_A08G1548 557 NQNEAVAVNFPVRSSSN--QPSALPN----LLRFVKQLSPKIVVSLDGGWDRNDLPFPELVTCAFQSYKNIFESLDAG-NVTSDVVNKIERFLIVPRI 647
                  99*********955544..5666666....*********************************************888.6899*************** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++ v  + ++     e++  W+  l ++GF+pv++s+++ +qa++++++ +++g++ve+++ slvl+W++r+L+s+SaWr
  Gh_A08G1548 648 ESTVLGRLRA----PENMPLWKTLLCSSGFTPVTFSNFTITQADCVVKRAQVRGFHVEKRQPSLVLCWQQRELISASAWR 723
                  *****99998....9****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.377336703IPR005202Transcription factor GRAS
PfamPF035145.9E-90364723IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MQFQLQVNGA VELPGFGSIC QQDKWIKQQE GVANGFYYNN EQEPTSVLHM RRSQSPPTSA  60
STPTSSFNGG AGGGNSTENT TNTAATIAPP NNKEEWATEL RQIPSEIDLV PEHESTQRCN  120
IGLGDWETLL SESAVSPSQD HSLLRWIAGD AGDHSFGIKQ LLQSGSTGPN QGHDFDGNAG  180
SWVVDPSPGF EPIGSLATSG NVLSSAAPIL GGFPDSGFVP NPNNNDNGKV GVATPSCSSV  240
EGVNNHKVLG ATVGLDISIQ DIISASPDNS IGLPVTLPTL YQQQQQDLEK PQILMGRQRH  300
QQRPQNPNFS FPLPQEQDLL EPLPKRLNAG NLEFSSQIPK LAGHELFTRK QLQQHMVAEE  360
EVLELLHKAA ELVGTGNFAH ARGILARLNH QLSPVGKPFQ RAAFYIRKAL QLLITNNSVS  420
PPPPKSPTRF DVIFKLLAYK VFSEVSPFIQ FVNFTSNQAL LEALDDAERI HIMDFDIGCG  480
AQWASFMQEL PMRIRGVRAL RITAFASPLT HHPIELGLMR ESLMLFANEI GLSFELVVLN  540
FDSLDQAPYS LPLFRTNQNE AVAVNFPVRS SSNQPSALPN LLRFVKQLSP KIVVSLDGGW  600
DRNDLPFPEL VTCAFQSYKN IFESLDAGNV TSDVVNKIER FLIVPRIEST VLGRLRAPEN  660
MPLWKTLLCS SGFTPVTFSN FTITQADCVV KRAQVRGFHV EKRQPSLVLC WQQRELISAS  720
AWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-3538572326375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2361120.0KP236112.1 Gossypium hirsutum LOM-like transcription factor (LOM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623706.10.0PREDICTED: scarecrow-like protein 27
SwissprotO813161e-104SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A1U8LX550.0A0A1U8LX55_GOSHI; scarecrow-like protein 27
STRINGGorai.004G200600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16534813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-104GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]