PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1313
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 299aa    MW: 33449.3 Da    PI: 8.3858
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1313genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06225125
                 --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                 +k++lC+ffa  G C  G+ C F+H
  Gh_A08G1313  2 PKRVLCKFFAH-GACLKGEHCEFSH 25
                 79*****6666.************* PP
2zf-CCCH17.76.6e-063454526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 +C f+++ G C yG+rC++ H+
  Gh_A08G1313 34 ICTFYQK-GNCFYGSRCRYEHV 54
                 7******.***********997 PP
3zf-CCCH18.14.7e-06142164326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  +++C+ fa  G C++G++C+ +Hg
  Gh_A08G1313 142 RSICS-FAVAGNCPRGEKCPHIHG 164
                  67899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-7426IPR000571Zinc finger, CCCH-type
PfamPF156631.2E-7759No hitNo description
PROSITE profilePS5010314.223056IPR000571Zinc finger, CCCH-type
SMARTSM003560.00113055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.502139166IPR000571Zinc finger, CCCH-type
SMARTSM003560.02141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-4144164IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.31E-13197272No hitNo description
Gene3DG3DSA:3.30.40.104.5E-10201267IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00551207267No hitNo description
PROSITE profilePS5008912.165208266IPR001841Zinc finger, RING-type
PfamPF000976.5E-7208265IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001845.8E-7208265IPR001841Zinc finger, RING-type
PROSITE patternPS005180232241IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MPKRVLCKFF AHGACLKGEH CEFSHQWKHP PNNICTFYQK GNCFYGSRCR YEHVKASQSD  60
PSASSSSTAP QQSTLSDTMP LTPSKTASVG SVVPPAASNK VPGSSRACLA PFKKPCDLES  120
GPQGPSDNGE SMEPRSTNPV ERSICSFAVA GNCPRGEKCP HIHGDLCPTC EKHCLHPFRP  180
EEREEHIKMC KKKKKYLDAL KHSQEIECSV CLDHVLSKPT AAERKFGLLS ECDHPFCISC  240
IRNWRSSSPS SGMDVNTALR ACPICRKLSY FVIPSVIWYW TPEEKQRKED IFGMQFYLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.195653e-84boll| ovule| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717157.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like
SwissprotE0X9N41e-119C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1U8LRF30.0A0A1U8LRF3_GOSHI; zinc finger CCCH domain-containing protein 69-like
STRINGGorai.004G173300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-109C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]