 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A08G1245 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
ERF |
| Protein Properties |
Length: 254aa MW: 28270.8 Da PI: 7.8417 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A08G1245 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 58.5 | 1.6e-18 | 134 | 184 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
+kGVr++ +g+++AeIrdp+ ng +r++lg++ t+e+Aa a+++a+ k++g+
Gh_A08G1245 134 FKGVRRRL-WGKYAAEIRDPKRNG--ARIWLGTYETPEDAALAYDKAAFKMRGA 184
8****877.**********98776..**************************95 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MNVEILSESD FNILESFQRF FDGFDESPRP PPTTTPTCDD IVLQPFHNRC LSFSGVFLNE 60
NWGDLPLKID DSEDMLVYST LRDAANSGWS PSNEADSTTV SSEACSEGKE KLKEVVEREP 120
NVLLPPSSRR GANFKGVRRR LWGKYAAEIR DPKRNGARIW LGTYETPEDA ALAYDKAAFK 180
MRGAKAKLNF PHLIGSSYCE PIRVGSRRRS LEPPSASTTS PKRRKSTAAV TNSTAPTEVI 240
QMSSCKPGGQ VWIF
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 206 | 224 | RRRSLEPPSASTTSPKRRK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT2G44840.1 | 8e-64 | ethylene-responsive element binding factor 13 |
