PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1086
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 430aa    MW: 49215 Da    PI: 4.9842
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1086genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.61e-35111323128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  +G+rFhPtd+elv++yL +k+ +++  + ++ikev  +++ +Pw+Lp  +++++ ++ wyfFs+r  +    kr +r+t++g+Wk tgk ++v+   +
  Gh_A08G1086  11 VGYRFHPTDKELVDHYLWNKILDRDSLV-QAIKEVdSLFNKDPWELPgwSEIQSADQVWYFFSRRGDN----KRVKRTTDKGFWKVTGKPRKVKG--K 101
                  7***********************9777.88****5599********6559999999*******9875....69*******************87..6 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +    kk+Lvfy+gr+p+++ t Wv+hey++
  Gh_A08G1086 102 KGCAAKKSLVFYEGRTPNAKWTPWVIHEYTF 132
                  6799*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-388151IPR003441NAC domain
PROSITE profilePS5100540.4469151IPR003441NAC domain
PfamPF023651.2E-2111131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSNIDDNSHI VGYRFHPTDK ELVDHYLWNK ILDRDSLVQA IKEVDSLFNK DPWELPGWSE  60
IQSADQVWYF FSRRGDNKRV KRTTDKGFWK VTGKPRKVKG KKGCAAKKSL VFYEGRTPNA  120
KWTPWVIHEY TFTSTLLDNR EGIFLCKLKK KEDETANASS SESCQPSLVA EEEIPDNSTM  180
FNPDEMLDTL KERDREHELE MDEQQQPPDF TSYCDGLPHL SKEENDDESW IGYLVDDDEI  240
NPDELNLGNE CRNFALVGTS VTCPGEPSRK RSRREAVVLC GAIENEECQP MLYEQAVSNS  300
MMLDEHGGSK KHQALAMVNA PNVTSSSVKQ DPHGRDRMVS LNNESGEMDI PDVESVVDPH  360
GIVRATRFHN PYYKKLGEQE DDPKRINKRG KFCRKIAFQD EAIDVKQHAT AVNLPIIMES  420
TADRATYFLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-201215418171Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382388PKRINKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016701795.10.0PREDICTED: uncharacterized protein LOC107916932 isoform X1
TrEMBLA0A1U8KH620.0A0A1U8KH62_GOSHI; uncharacterized protein LOC107916932 isoform X1
STRINGGorai.004G149000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2081746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.17e-32NAC domain containing protein 69