PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A08G0953 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 417aa MW: 46818.6 Da PI: 7.6767 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 97.9 | 6.4e-31 | 117 | 207 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g Gh_A08G0953 117 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKELDAGDIVSFQRGaG 207 89***************************966778999*************************************************6523 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-42 | 109 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.07E-29 | 114 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.88E-27 | 115 | 204 | No hit | No description |
PROSITE profile | PS50863 | 14.72 | 117 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.3E-21 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-28 | 117 | 211 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 417 aa Download sequence Send to blast |
MDFGSSGREG LCEEEQMGKG KLPFTYSPSP SSSSSQHKSQ LPPLRNPGWE EQPWPIYDNR 60 HHRMTSDLLG YRCQPQQDIN EATTVTSEAD SRRVDSDSTL ELRTSESATD IEKEHMFDKV 120 VTPSDVGKLN RLVIPKQHAE KYFPLDSSTN EKGLLLNFED RNGKPWRFRY SYWNSSQSYV 180 MTKGWSRFVK DKELDAGDIV SFQRGAGEMG KDRLFIDSKR RPDAPALVSF HPHQHYFSLG 240 RSIPWNPLLM RPPPTGRDRL YLSPVNPINR RNSYYGGYPT GINVVNPGDA VGSLFYLRSA 300 VGSGAPQMGM IQRQQQGGVV EPILFDSVPV VQSKAAPKRM RLFGVNMECP IPESNECEML 360 TTSTLAHATM APQHPDQPPS SSQHPLQLRL YNGTPLPPTD FLNANKGKAS LSFDLDT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-63 | 112 | 222 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-63 | 112 | 222 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016668428.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Refseq | XP_016738908.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
TrEMBL | A0A1U8HWW3 | 0.0 | A0A1U8HWW3_GOSHI; B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
STRING | Gorai.004G128200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46870.1 | 3e-75 | B3 family protein |