PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0751
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 547aa    MW: 59298.7 Da    PI: 8.4193
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0751genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.4e-11184243155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +   g  ++ ++ +   ++ +++Aa+a++ a++k++g
  Gh_A08G0751 184 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQGNTSGYDKEDKAARAYDLAALKYWG 243
                  57*******************655554475334777777777788*************98 PP
2AP247.15.8e-15286337155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Gh_A08G0751 286 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 337
                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-8184243IPR001471AP2/ERF domain
CDDcd000185.03E-17184253No hitNo description
SuperFamilySSF541715.23E-13184253IPR016177DNA-binding domain
SMARTSM003801.7E-19185257IPR001471AP2/ERF domain
PROSITE profilePS5103216.331185251IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-10185252IPR001471AP2/ERF domain
PRINTSPR003672.4E-6186197IPR001471AP2/ERF domain
PfamPF008477.2E-10286337IPR001471AP2/ERF domain
CDDcd000182.04E-24286347No hitNo description
SuperFamilySSF541717.85E-18286347IPR016177DNA-binding domain
SMARTSM003801.5E-33287351IPR001471AP2/ERF domain
PROSITE profilePS5103219.045287345IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18287346IPR001471AP2/ERF domain
PRINTSPR003672.4E-6327347IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MNIRNMDSSS SPNYSLAFSL SSHHHHQSHL SFFSSSSNPT LFQAFNTSAA AAAAFPTTAP  60
PANSLSAEKD AGVEGPATTA SATTDLSMFK GGPKLEDFLG GSSTTAGVGG APQLQLLHHH  120
NFSTQTPVTV SDKDVYDSEL KTIAARFLRG FSSEQIDIHK QQQQALTAEP APKRSVDTFG  180
QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQGN TSGYDKEDKA ARAYDLAALK  240
YWGPTTTTNF PISNYEKELE EMKNMTRQEF VASLRRKSSG FSRGASIYRG VTRHHQHGRW  300
QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDMSRYD VNSIANSNLP  360
IGGLNNKSKN CNDSASDSRS TDEERDHSGS SGMTFTSQPA ASSMLGFAIN IKQDPSDYWS  420
NVLGYNDTGA SLSSAKNPMF HHSPNGSGFQ SPSGFCTGNG GNSAVRGSIN NGLFNRGSYV  480
GQEQQESSAA TNSHPLATPI VLNNSDNYES SSSGYGGNWN LAQSFQSTYQ TAKPSLSVFQ  540
TPIFGVE
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016707002.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X1
SwissprotQ6PQQ31e-163AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1U8KX420.0A0A1U8KX42_GOSHI; AP2-like ethylene-responsive transcription factor AIL5 isoform X1
STRINGGorai.004G099100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-154AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]