PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G0235 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 381aa MW: 42520.1 Da PI: 7.7743 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.2 | 9.1e-06 | 5 | 28 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G++C F+H+ Gh_A08G0235 5 KRVLCKFFAH-GACFKGENCEFSHD 28 89****6666.*************5 PP | |||||||
2 | zf-CCCH | 25.7 | 1.9e-08 | 36 | 56 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ G+C+yG++C++ H+ Gh_A08G0235 36 ICTYYQK-GICSYGSQCRYEHV 56 7******.***********997 PP | |||||||
3 | zf-CCCH | 21 | 6.1e-07 | 145 | 167 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++Gd+C+ +Hg Gh_A08G0235 145 RPICS-FAAAGNCPRGDNCPHIHG 167 78999.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-5 | 2 | 30 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-6 | 3 | 29 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-8 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 3 | 30 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.633 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-4 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 34 | 55 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-4 | 36 | 55 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-6 | 36 | 56 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.216 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-4 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-4 | 145 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-4 | 148 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.24E-13 | 199 | 275 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 6.8E-10 | 205 | 270 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 1.81E-4 | 210 | 270 | No hit | No description |
Pfam | PF00097 | 2.7E-7 | 211 | 268 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 2.1E-7 | 211 | 268 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.238 | 211 | 269 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 235 | 244 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.37 | 298 | 326 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.929 | 298 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MPKTKRVLCK FFAHGACFKG ENCEFSHDWK DPPNNICTYY QKGICSYGSQ CRYEHVKASQ 60 TDLSASSSST KPRQFGVSGS APLGPSTSTY RGSVVLPATS GEFPGSNGGF LPPSTNQAWH 120 LESGQQDLLD DGDVLQPRSA NLVERPICSF AAAGNCPRGD NCPHIHGDLC PTCGKHCLHP 180 FRAEEREEHI KMCEKKQKHL EALKYSQEIE CSVCLDRVLS KSTAAERKFG LLSECDHPFC 240 ISCIRNWRSS SPSSGMDVNT ALRACPICRK LSYFVIPSVI WYSTPEEKQE IIDSYKAKLR 300 SIDCKHFNFG NGNCPFGTSC FYKHAYRDGR LEEVALRHLG AEDGHTVNVH NIYYNDYINN 360 AKDLYAALMK NFLGFLVLHS L |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.19565 | 0.0 | boll| ovule| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016712503.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X2 | ||||
Swissprot | E0X9N4 | 1e-171 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A1U8LGJ3 | 0.0 | A0A1U8LGJ3_GOSHI; zinc finger CCCH domain-containing protein 69-like isoform X2 | ||||
STRING | Gorai.004G036900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2944 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-159 | C3H family protein |
Publications ? help Back to Top | |||
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