PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 225aa MW: 25042.8 Da PI: 8.6986

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G0206	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.5	9e-20	29	78	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp + ++r++lg+f++aeeAa+a++aa+ l+g Gh_A08G0206 29 RYRGVRKRP-WGRFAAEIRDPLK---KTRVWLGTFDSAEEAARAYDAAAITLRG 78 69*****.******743...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	6.1E-38	29	92	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.131	29	86	IPR001471	AP2/ERF domain
CDD	cd00018	3.64E-18	29	86	No hit	No description
Pfam	PF00847	6.3E-14	29	78	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.0E-32	29	86	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-22	29	87	IPR016177	DNA-binding domain
PRINTS	PR00367	4.7E-11	30	41	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-11	52	68	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MRKGRGATAA ADAAMKPAVE ANGSVKELRY RGVRKRPWGR FAAEIRDPLK KTRVWLGTFD 60 SAEEAARAYD AAAITLRGNK AKTNFPFNSS DFPAFGIDRH HRRNNEGFIA DGHRFHQTGG 120 DYEDPEVNPQ RPARSSMSST VESFSGPRPT QPPRKPSDFE AVSTRKYHPK MPRMAPEDCR 180 SDCDSSSSVV DDGDDDNVSS SRRKILPFDL NFPPLDEVDD LTLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-21	29	86	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.16476	0.0	boll\| ovule\| root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	73761694	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:11487705, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ116447	0.0	DQ116447.1 Gossypium hirsutum ethylene-responsive element-binding factor (ERF3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001314191.1	1e-164	ethylene-responsive transcription factor 3-like
Refseq	XP_016712632.1	1e-164	PREDICTED: ethylene-responsive transcription factor 3-like
Swissprot	O80339	3e-48	ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBL	Q2QDF5	1e-163	Q2QDF5_GOSHI; Ethylene-responsive element-binding factor
STRING	Gorai.004G032500.1	1e-134	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50640.1	9e-35	ethylene responsive element binding factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]