PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0112
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 330aa    MW: 37560.1 Da    PI: 9.006
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0112genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B384.21.2e-26131227184
                  EEEE-..-HHHHTT-EE--HHH.HTT.............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                  f+k+ltpsdv+k++rlv+pkk+a +h                 +   e+++l+++d+s + W+++++y+k+s+++v+t+GW++Fvk+++Lke+D + F
  Gh_A08G0112 131 FQKELTPSDVGKLNRLVIPKKHAVKHfphiendhqtfttA---NggcEDVELVFYDTSMKMWRFRYCYCKSSQSFVFTRGWNRFVKDKKLKEKDAIAF 225
                  99*************************9887655555551...0555899************************************************ PP

                  EE CS
           B3  83 kl 84 
                  + 
  Gh_A08G0112 226 YT 227
                  93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-31128231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-23130226No hitNo description
SuperFamilySSF1019366.28E-27130230IPR015300DNA-binding pseudobarrel domain
PfamPF023627.3E-24131227IPR003340B3 DNA binding domain
PROSITE profilePS5086311.66131249IPR003340B3 DNA binding domain
SMARTSM010199.6E-18131237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAATKTSRSG GGSGGDDYMF RASKRLKTET SGGLARFKGI VPQQNGHWGA QIYANHQRIW  60
LGIGDPHRNF PLSYDNIQEP NFQNLHTTRD ILNMIKSGSY QSKFADYTKS SANHNKNTIH  120
NDTKFACQQL FQKELTPSDV GKLNRLVIPK KHAVKHFPHI ENDHQTFTTA NGGCEDVELV  180
FYDTSMKMWR FRYCYCKSSQ SFVFTRGWNR FVKDKKLKEK DAIAFYTCEC TGEIEHGRGF  240
FLIDVNYNGG DDENGGRIDV FKRLGSSSVL HHHQGELHVG LELNLGTNFY CNLDEKHNEN  300
CEDQGLSGLK SSSSHRMKEK RITLFGARIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-2912722510100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624963.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P55e-81RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2P5XQ330.0A0A2P5XQ33_GOSBA; Uncharacterized protein
STRINGGorai.004G018300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2452634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-83RAV family protein