PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0095
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 314aa    MW: 34574.5 Da    PI: 9.0245
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0095genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000386082123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++Cp C+k F++   L  H r H
  Gh_A08G0095 60 HVCPVCSKGFTSGKALGGHVRIH 82
                 79***************999998 PP
2zf-C2H2157.2e-05135156223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C +C+k F++  +L  H+r+H
  Gh_A08G0095 135 SCCICKKDFKSLKSLFGHMRNH 156
                  6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.9936087IPR007087Zinc finger, C2H2
SMARTSM003550.0236082IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-46083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.3E-86084IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-76082No hitNo description
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-7129156No hitNo description
SMARTSM003550.21134156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
PfamPF139127.2E-6136158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDDQVTNTME KGSDSIETSD SVPLKPNNNK LMVKLKISKK RYGGSGGGGG GGGGDGGGQH  60
VCPVCSKGFT SGKALGGHVR IHMKANKNGG RYKKISKRQP RNNNNNNIRK KIPIMAAVAA  120
AETPHESHGS EEKVSCCICK KDFKSLKSLF GHMRNHPERN WRGIRPPPSD RNSCCSSVSE  180
NDEAVVVDQI KGSASDLLKS LPKWTTTTKR FEKSTRSDHA NNADADTDTD TEDEITEAAY  240
CLMKLSRGNS FELDNTKIHK TPLKTSFYTK NPKTTPLKEE AKQYYTKNNK TQQLDFDLNE  300
PYIGEDSDDS DNEV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6157231e-168JX615723.1 Gossypium hirsutum clone NBRI_GE59867 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624954.10.0PREDICTED: uncharacterized protein LOC108468582
TrEMBLA0A1U8NG980.0A0A1U8NG98_GOSHI; uncharacterized protein LOC107948087
STRINGGorai.004G014300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-21C2H2 family protein