PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Expression |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A08G0081

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 202aa MW: 21847.9 Da PI: 4.9209

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G0081	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136	1.4e-42	37	136	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+lapyfp ++p+kf +h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ Gh_A08G0081 37 PCAACKILRRRCADKCMLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQ 134 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Gh_A08G0081 135 AE 136 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.172	36	137	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-43	37	134	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MFKMEYGEAT PSAVASPNSS NPSSPSTPTS PLVVISPCAA CKILRRRCAD KCMLAPYFPP 60 TEPAKFTTAH RVFGASNIIK FLQELPESQR ADAVSSMVYE ASARIRDPVY GCAGAICQLQ 120 KQVNELQAQL AKAQAEVVNM QLQQANLVGA LLCMEATAPP PQPHPQQFAV DTFICSPQSY 180 NSNPGFIDDD DNNNLGSLWE PL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-42	23	139	1	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-42	23	139	1	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.25685	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016739261.1	1e-148	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9SK08	4e-76	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A1U8NJS9	1e-147	A0A1U8NJS9_GOSHI; LOB domain-containing protein 1-like
STRING	Gorai.004G012800.1	1e-109	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	2e-64	LOB domain-containing protein 11