PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G2342 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 32713.2 Da PI: 9.3565 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll+ ++k +G g W+ +++ g++R++k+c++rw++yl Gh_A07G2342 14 KGAWTALEDKLLASYIKTHGEGKWSDLSKRAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l Gh_A07G2342 67 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTVL 112 78999*****************.*********.************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.789 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.48E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.117 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.75E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGRSPSCSKE GLNKGAWTAL EDKLLASYIK THGEGKWSDL SKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SHDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT VLRKRAKAQA 120 SIGTPPSKST QKMLSTESGV CEPLRSPRAT KAKIKVILTK ATRSSSKVRI PTQLPAAQQI 180 DKLRDGQLKS TNNNQEMSGD IATVEAHNGT QMIDSLYSDG GGSDLLNEQL KESDVEFEEN 240 LMQPLAFDEA MFKNWTVNPC LNGKDAMDFD SLAFLLEMDE YGFYRNINFQ T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 109888620 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF336284 | 1e-125 | AF336284.1 Gossypium hirsutum GHMYB36 (ghmyb36) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017644867.1 | 0.0 | PREDICTED: transcription factor MYB23-like | ||||
Swissprot | P10290 | 2e-60 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A346KJX3 | 0.0 | A0A346KJX3_GOSAR; Transcription factor TT2 | ||||
STRING | Gorai.001G020400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24386 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 5e-61 | myb domain protein 7 |