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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G2338 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 31909.4 Da PI: 5.683 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+++v+ +G+g +W + + + g++R++k+c++rw++yl Gh_A07G2338 14 RGPWSPEEDATLKNYVQSHGTGgNWIALPLKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 5.8e-14 | 69 | 119 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + q+G++ +W++Ia+ ++ gRt++++k++w++ Gh_A07G2338 69 GGFTEEEDNIICSLYSQMGSRqtfmilvRWSLIASQLP-GRTDNDVKNYWNT 119 569***********************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.791 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.65E-25 | 11 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.82E-8 | 16 | 62 | No hit | No description |
SMART | SM00717 | 4.4E-10 | 67 | 123 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.602 | 67 | 125 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.8E-12 | 69 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-23 | 70 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.04E-10 | 71 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDATLKNYVQ SHGTGGNWIA LPLKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNIIC SLYSQMGSRQ TFMILVRWSL IASQLPGRTD NDVKNYWNTK 120 LKKKLLAGKS SFNVDNNGGL LNANNNNIPT QPLPYNLDYS TTSLPIFSDV SYGFSVSNSS 180 TSQNMGLDPV MQFSTPDTIT NLSQSGPNLD NSHNNIVVVS SSQEGSALSD STGNGYGEDT 240 GSIILMDDQQ FSYEFPYEFV NGVLAGPSFE FSHGDLKTSQ GLNQSVATNP Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 14 | 125 | 7 | 108 | B-MYB |
1h8a_C | 3e-23 | 14 | 125 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ459145 | 5e-51 | AJ459145.1 Gossypium hirsutum partial myb117 gene, clone pGhMYB117. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017639920.1 | 0.0 | PREDICTED: transcription factor MYB36-like | ||||
TrEMBL | A0A1U8LUJ5 | 0.0 | A0A1U8LUJ5_GOSHI; transcription factor MYB36-like | ||||
STRING | Gorai.001G024300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22115 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 4e-68 | myb domain protein 84 |