PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G1966 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 251aa MW: 28649.1 Da PI: 7.3948 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56 | 7e-18 | 66 | 119 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + +++ +q+++Le+ Fe +++ ++ +LAk lgL+ rq+ +WFqNrRa++k+ Gh_A07G1966 66 KKRLNMDQVKALEKSFELGNKLEPGRKLQLAKDLGLKPRQIAIWFQNRRARWKN 119 556899**********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 123.2 | 1.3e-39 | 64 | 155 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+ +qvk+LE+sFe +kLep rK +la++Lgl+prq+a+WFqnrRAR+k+kqlEkdy+aLk+ y++ k++n++L++++++L+++l Gh_A07G1966 64 EKKKRLNMDQVKALEKSFELGNKLEPGRKLQLAKDLGLKPRQIAIWFQNRRARWKNKQLEKDYDALKKLYQTAKADNDALQAQNKKLTAQLL 155 69**************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.77E-19 | 48 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.601 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-17 | 63 | 124 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.15E-14 | 65 | 121 | No hit | No description |
Pfam | PF00046 | 2.9E-15 | 65 | 119 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-19 | 67 | 128 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 91 | 100 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 100 | 116 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.6E-11 | 120 | 160 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAFPPHAFMF QTLHEDQNHF PSPYSLLPCP PQLFHGGVGK SHQEVHGHGD DDEYSDDDGS 60 HGGEKKKRLN MDQVKALEKS FELGNKLEPG RKLQLAKDLG LKPRQIAIWF QNRRARWKNK 120 QLEKDYDALK KLYQTAKADN DALQAQNKKL TAQLLSLKTK DSNETRIKNE NEGSWCSNGS 180 ENNYDMNLAI RPATTMTQLL HGSSKPSLHC LKLDQVVHQD QSLACHMFNQ DGDEQQGFWP 240 WADQSIKFPL N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 120 | RRARWKNKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}. | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016746821.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT7-like | ||||
Refseq | XP_017642633.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT7-like | ||||
Swissprot | Q8LAT0 | 1e-72 | ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20 | ||||
TrEMBL | A0A1U8P6I0 | 0.0 | A0A1U8P6I0_GOSHI; homeobox-leucine zipper protein HAT7-like | ||||
TrEMBL | A0A2P5YNG9 | 0.0 | A0A2P5YNG9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G256300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24696 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 2e-67 | homeobox 3 |