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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_A07G1919 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 189aa MW: 21335.3 Da PI: 5.9657 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.6 | 0.0002 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C C++ F++ L H++ H
Gh_A07G1919 43 YECVFCKRGFTTAQALGGHMNIH 65
99*******************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 2.43E-6 | 41 | 69 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 3.5E-4 | 41 | 69 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 10.99 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 189 aa Download sequence Send to blast |
MRFWDSKSTL SMESSQLEDS KSSSEETDRS EQSNDDTGTG RSYECVFCKR GFTTAQALGG 60 HMNIHRKDRA KGSRPSSVPI VSDKFVDVDD HDNYNPRISS YPYPPIQTYH SMDPDQLPVS 120 YKALFPDSGW GFRPPHSYHE LFVHNSQNMN PFGLSLGMGP SHVYENNKAY GSSQQDDGLD 180 LELRLGHHP |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016724971.1 | 1e-137 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
| TrEMBL | A0A1U8MDS6 | 1e-135 | A0A1U8MDS6_GOSHI; transcriptional regulator SUPERMAN-like | ||||
| STRING | Gorai.001G251300.1 | 1e-135 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM15373 | 7 | 17 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G43540.1 | 2e-13 | C2H2 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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