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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G1753 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CO-like | ||||||||
Protein Properties | Length: 408aa MW: 44636.3 Da PI: 4.7055 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.8 | 3.9e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ + +C+++ +lC +C + H+ H++ Gh_A07G1753 4 ICDFCGNQPSTVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 7*****************************65677777765 PP | |||||||
2 | zf-B_box | 21.7 | 4.3e-07 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C++++++++ C + ++ +C++C l +H+ H++++ Gh_A07G1753 46 LLCERCNSQPAFVRCVEERVSFCQNCDLMGHSTstlnstHRRQT 89 57*****************************6688888888765 PP | |||||||
3 | CCT | 63 | 9.5e-22 | 351 | 394 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ Gh_A07G1753 351 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 394 889**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.613 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.22E-8 | 4 | 47 | No hit | No description |
SMART | SM00336 | 5.5E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.617 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.36E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.16 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.0E-16 | 351 | 393 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.418 | 351 | 393 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MGYICDFCGN QPSTVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC 60 VEERVSFCQN CDLMGHSTST LNSTHRRQTI NCYSGCPSSA ELSSIWSFFS QSPSAGESTC 120 EQELRQMSIT ETSWYPTENT ISQNDTGDAE VNRDYNVDRG SSWSGSSIPE LRSGPGLLDQ 180 PAGTADTSLS ELSCPQTKCP GVCEDDLYDD FNMDEIDLNL EKYEELFGLT LNHSEELFGN 240 GGIDSLFGTK DMSATDSYQG AVAAEGSSVG LVNAIQPACS NAASADSMMS NKTDSILCFT 300 ARQDHSSFSF SGLTGESSGG DYQDCGASAM LLMGEVPWCP PSEGPFSSAT RSDAVMRYKE 360 KKKTRKFEKR VRYASRKARA DVRKRVKGRF VKAGDDYDYD PLNPTRSC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.24867 | 0.0 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016730024.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_016730025.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 1e-145 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A1U8MT76 | 0.0 | A0A1U8MT76_GOSHI; zinc finger protein CONSTANS-LIKE 9-like | ||||
STRING | Gorai.001G223800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-109 | CONSTANS-like 9 |