PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G1618 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 417aa MW: 46700.8 Da PI: 7.8225 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 337 | 3.3e-103 | 35 | 416 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lLl+cA++ ss++l++a+++L ++s las +gd+mqRl a f+ ALa rl++ +++l kal+ ++ ++ +++ +a+ lf v+P+l fs+ + Gh_A07G1618 35 LIQLLLTCAKHASSSNLHRADECLRQISLLASVSGDSMQRLSAWFASALAVRLVKRWPGLHKALNYTQLPK--QDQLGQAQPLFGRVFPYLGFSYAII 130 689*****************************************************************995..777788999**************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +++ +a+ ge+ +H +D++ + W++Ll+++++ +g+p+l++T +++ +k lee+g rL k Ae+lg+pf+f +l +l +l+l++L v Gh_A07G1618 131 SRTLIKAMTGERVIHLVDLGSGDANLWIPLLRSFSCLLDGQPHLKVTCMNA----NKAILEELGPRLVKEAEALGLPFQFAPL-NASLRELTLDKLGV 223 ***************************************************....99*************************5.889*********** PP GRAS 197 kpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres. 279 k+gEala ++l+lh+ll + + +++ ++L++++s s+k++ +ve+eadhn +++ +rf+e l+yysa+fds++a+++ ++ Gh_A07G1618 224 KSGEALAFISILNLHTLLaeddsvdahfshnkTNGIKDSKQMFRFLSTIRSSSAKIFFLVEKEADHNLNKLIDRFVEGLHYYSAVFDSVDASFGGNTs 321 **************************999976333444446778*********************************************999987665 PP GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +er ++E++ +g+ei+n+vac g er+erhe++++W r+++aGFkpv + ++ +++ak +++ ++ +gy++ +e++sl+++W+drpL++vSaW+ Gh_A07G1618 322 sRERLVLEEM-FGKEIENIVACDGVEREERHERYGRWMVRFGQAGFKPVMMWHDSTEDAKQMVEACGRNGYKIVNERASLMICWHDRPLYAVSAWT 416 6999999999.************************************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.149 | 9 | 396 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-100 | 35 | 416 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MMSSSPKPEV TLSLTLSPGS TLQEVVKPEE RGVRLIQLLL TCAKHASSSN LHRADECLRQ 60 ISLLASVSGD SMQRLSAWFA SALAVRLVKR WPGLHKALNY TQLPKQDQLG QAQPLFGRVF 120 PYLGFSYAII SRTLIKAMTG ERVIHLVDLG SGDANLWIPL LRSFSCLLDG QPHLKVTCMN 180 ANKAILEELG PRLVKEAEAL GLPFQFAPLN ASLRELTLDK LGVKSGEALA FISILNLHTL 240 LAEDDSVDAH FSHNKTNGIK DSKQMFRFLS TIRSSSAKIF FLVEKEADHN LNKLIDRFVE 300 GLHYYSAVFD SVDASFGGNT SSRERLVLEE MFGKEIENIV ACDGVEREER HERYGRWMVR 360 FGQAGFKPVM MWHDSTEDAK QMVEACGRNG YKIVNERASL MICWHDRPLY AVSAWTC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-48 | 27 | 416 | 11 | 379 | Protein SCARECROW |
5b3h_A | 5e-48 | 27 | 416 | 10 | 378 | Protein SCARECROW |
5b3h_D | 5e-48 | 27 | 416 | 10 | 378 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017648552.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
TrEMBL | A0A2P5WQQ2 | 0.0 | A0A2P5WQQ2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G207600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20661 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-106 | scarecrow-like 3 |