PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1618
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 417aa    MW: 46700.8 Da    PI: 7.8225
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1618genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3373.3e-103354161374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++ ss++l++a+++L ++s las +gd+mqRl a f+ ALa rl++ +++l kal+ ++ ++  +++  +a+ lf  v+P+l fs+ + 
  Gh_A07G1618  35 LIQLLLTCAKHASSSNLHRADECLRQISLLASVSGDSMQRLSAWFASALAVRLVKRWPGLHKALNYTQLPK--QDQLGQAQPLFGRVFPYLGFSYAII 130
                  689*****************************************************************995..777788999**************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                   +++ +a+ ge+ +H +D++ +    W++Ll+++++  +g+p+l++T +++    +k  lee+g rL k Ae+lg+pf+f +l   +l +l+l++L v
  Gh_A07G1618 131 SRTLIKAMTGERVIHLVDLGSGDANLWIPLLRSFSCLLDGQPHLKVTCMNA----NKAILEELGPRLVKEAEALGLPFQFAPL-NASLRELTLDKLGV 223
                  ***************************************************....99*************************5.889*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres. 279
                  k+gEala  ++l+lh+ll               +  + +++  ++L++++s s+k++ +ve+eadhn +++ +rf+e l+yysa+fds++a+++ ++ 
  Gh_A07G1618 224 KSGEALAFISILNLHTLLaeddsvdahfshnkTNGIKDSKQMFRFLSTIRSSSAKIFFLVEKEADHNLNKLIDRFVEGLHYYSAVFDSVDASFGGNTs 321
                  **************************999976333444446778*********************************************999987665 PP

         GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +er ++E++ +g+ei+n+vac g er+erhe++++W  r+++aGFkpv + ++ +++ak +++ ++ +gy++ +e++sl+++W+drpL++vSaW+
  Gh_A07G1618 322 sRERLVLEEM-FGKEIENIVACDGVEREERHERYGRWMVRFGQAGFKPVMMWHDSTEDAKQMVEACGRNGYKIVNERASLMICWHDRPLYAVSAWT 416
                  6999999999.************************************************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.1499396IPR005202Transcription factor GRAS
PfamPF035141.1E-10035416IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMSSSPKPEV TLSLTLSPGS TLQEVVKPEE RGVRLIQLLL TCAKHASSSN LHRADECLRQ  60
ISLLASVSGD SMQRLSAWFA SALAVRLVKR WPGLHKALNY TQLPKQDQLG QAQPLFGRVF  120
PYLGFSYAII SRTLIKAMTG ERVIHLVDLG SGDANLWIPL LRSFSCLLDG QPHLKVTCMN  180
ANKAILEELG PRLVKEAEAL GLPFQFAPLN ASLRELTLDK LGVKSGEALA FISILNLHTL  240
LAEDDSVDAH FSHNKTNGIK DSKQMFRFLS TIRSSSAKIF FLVEKEADHN LNKLIDRFVE  300
GLHYYSAVFD SVDASFGGNT SSRERLVLEE MFGKEIENIV ACDGVEREER HERYGRWMVR  360
FGQAGFKPVM MWHDSTEDAK QMVEACGRNG YKIVNERASL MICWHDRPLY AVSAWTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-482741611379Protein SCARECROW
5b3h_A5e-482741610378Protein SCARECROW
5b3h_D5e-482741610378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648552.10.0PREDICTED: scarecrow-like protein 3
TrEMBLA0A2P5WQQ20.0A0A2P5WQQ2_GOSBA; Uncharacterized protein
STRINGGorai.001G207600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2066156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-106scarecrow-like 3