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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G1555 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 22608.4 Da PI: 4.3224 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00028 | 58 | 79 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k F+++ H+++H Gh_A07G1555 58 TCYVCSKNFTSWKAVFGHLKSH 79 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.764 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSIDDANETG IDDPKGQGSS SRKRGSTIDV AIQIGSGSGS GSNARKKREM EIPRGEPTCY 60 VCSKNFTSWK AVFGHLKSHQ RETPGALPPP TFTPTEGSPE NNNDDETNPR EQLAPTLLNL 120 ALETMQKMSE DSNMSVVVAG EEASSSGKGR GRGKGRGRGR GRRGLDIDLN QPKTSFLLDL 180 NEPPPPEQDD DDDYDDDDDD GAAADEDDKN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 160 | RGKGRGRGRG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016747552.1 | 1e-152 | PREDICTED: transcription regulatory protein SNF2-like | ||||
TrEMBL | A0A1U8P8L3 | 1e-151 | A0A1U8P8L3_GOSHI; transcription regulatory protein SNF2-like | ||||
STRING | Gorai.001G198600.1 | 1e-115 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5875 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35700.1 | 1e-13 | C2H2 family protein |